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This server and/or standalone program may be useful as well because of speed, being that 20 structures will take a while on most servers: http://ub.cbm.uam.es/mammoth/mult/ At 05:17 AM 1/12/2010, Ronnie Berntsson wrote: >Dear all, > >A bit off the topic question perhaps. >I am trying to find a program which can do multiple structural sequence >alignments. What I would like is a program which can take as input PDB >codes (or files), and which will output a multiple sequence alignment in >FASTA format with the full sequences of the supplied proteins intact. >Preferably said server/program should be able to handle at least 20 input >pdbs at once. >I've been looking around, but have so far failed to find a program which >does this. If anyone knows of a program or server which could handle this, >I would be very grateful. > >Cheers, >Ronnie Berntsson ========================================================================= | Mensur Dlakic, PhD | Tel: (406) 994-6576 | | Department of Microbiology | Fax: (406) 994-4926 | | Montana State University | Lab: (406) 994-6237 | | 109 Lewis Hall, P.O. Box 173520 | http://myprofile.cos.com/mensur | | Bozeman, MT 59717-3520 | E-mail: [log in to unmask] | =========================================================================