Sorry Jessie, meant to ask where fskview places all the labels? Never e-mail before your first coffee!

Dave Flitney, IT Manager
University of Oxford, FMRIB Centre
JR Hospital, Oxford OX3 9DU
T: 01865 222713 F: 01865 222717

On 4 Dec 2009, at 08:18, Dave Flitney <[log in to unmask]> wrote:

Jessie,

Just to comfirm the rest of the acquisition orientation: in fslview where does it place the A&P labels?

Dave Flitney, IT Manager
University of Oxford, FMRIB Centre
JR Hospital, Oxford OX3 9DU
T: 01865 222713 F: 01865 222717

On 3 Dec 2009, at 19:47, Jessie Mathews <[log in to unmask]> wrote:

Dear FSL Experts,

Our data is currently in neurological orientation, as confirmed by a Vitamin E capsule (we
placed the Vit. E pill on the left side of the head and fslview shows the pill on the left side
of the screen).

Using fslorient -getorient, however, fsl thinks that our data is in radiological orientation.
Additionally, the labels in fslview show the opposite from what they should - the left side is
labelled as right.

How does this effect my interpretation of data? Can I simply just swap left for right in my
results? For example, switch positive x coordinates with negative ones? Or are my results
uninterpretable as is. Please let me know if there is a solution for this.

Thank you in advance.