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Hello, I am following up with my question that was posted a few weeks ago. Given the labels below on FSL view, what does this mean for our data? Regards, J. On Fri, 4 Dec 2009 09:51:11 -0800, Jessie Mathews <[log in to unmask]> wrote: >Hi Dave, > >Here are where the labels are placed for all views: > >Coronal: R on left, L on right, S on top, I on bottom > > >Sagittal: P on left, A on right, S on top, I on bottom > > >Transverse: R on left, L on right, A on top, P on bottom > > >Thank you, > > >Jessie > >On Fri, Dec 4, 2009 at 12:22 AM, Dave Flitney <[log in to unmask]>wrote: > >> Sorry Jessie, meant to ask where fskview places all the labels? Never >> e-mail before your first coffee! >> >> >> Dave Flitney, IT Manager >> University of Oxford, FMRIB Centre >> JR Hospital, Oxford OX3 9DU >> T: 01865 222713 F: 01865 222717 >> >> On 4 Dec 2009, at 08:18, Dave Flitney <[log in to unmask]> wrote: >> >> Jessie, >>> >>> Just to comfirm the rest of the acquisition orientation: in fslview where >>> does it place the A&P labels? >>> >>> Dave Flitney, IT Manager >>> University of Oxford, FMRIB Centre >>> JR Hospital, Oxford OX3 9DU >>> T: 01865 222713 F: 01865 222717 >>> >>> On 3 Dec 2009, at 19:47, Jessie Mathews <[log in to unmask]> wrote: >>> >>> Dear FSL Experts, >>>> >>>> Our data is currently in neurological orientation, as confirmed by a >>>> Vitamin E capsule (we >>>> placed the Vit. E pill on the left side of the head and fslview shows the >>>> pill on the left side >>>> of the screen). >>>> >>>> Using fslorient -getorient, however, fsl thinks that our data is in >>>> radiological orientation. >>>> Additionally, the labels in fslview show the opposite from what they >>>> should - the left side is >>>> labelled as right. >>>> >>>> How does this effect my interpretation of data? Can I simply just swap >>>> left for right in my >>>> results? For example, switch positive x coordinates with negative ones? >>>> Or are my results >>>> uninterpretable as is. Please let me know if there is a solution for >>>> this. >>>> >>>> Thank you in advance. >>>> >>>> >>> >