Well, it also matters what user you were
using to start the jobs (which was probably not sgeadmin, as that is usually
reserved as a special user). The slots parameter should look something
like this (which is from my 2 node 8 core minicluster):
slots
1,[desktop1=8],[desktop2=8]
Where desktop1 and desktop2 are my two
computer’s host names. If it still isn’t working right, post
the output of qstat -f
Peace,
Matt.
From:
Sent: Thursday, December 10, 2009
10:59 PM
To: [log in to unmask]
Subject: Re: [FSL] Asking for your
help about running bedpostx on SGE
The username of
SGE on machine A and B are both sgeadmin. When I run bedpostx, I was logging in
A as root. I do not know what is causing the Permission denied before. So I
will use chmod -R 777 in the future if the similar problem come up.
I have 8 CPUs
on B, so I can just modify the all.q, long.q, verylong.q etc and change the
parameter "slot" from 1 to 8, to make all the 8 CPUs work, right?