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Yes.
Script it.

For example:
   for fn in *.nii.gz ; do fslchfiletype NIFTI $fn ; done

All the best,
	Mark


On 15 Dec 2009, at 15:31, Daniel Campbell-Meiklejohn wrote:

> Heya
>
> Very simple question. I would like to convert all the nii.gz files  
> in a directory to .nii.
>
> fslchfiletype NIFTI *       only changes the first file in the  
> directory and leaves the others in
> their original format.
>
> Is there a way to make it convert ALL the files in the directory?
>
> Cheers,
> Dan
>