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Well, it also matters what user you were using to start the jobs (which was probably not sgeadmin, as that is usually reserved as a special user). The slots parameter should look something like this (which is from my 2 node 8 core minicluster): slots 1,[desktop1=8],[desktop2=8] Where desktop1 and desktop2 are my two computer's host names. If it still isn't working right, post the output of qstat -f Peace, Matt. _____ From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf Of mic-dti-server Sent: Thursday, December 10, 2009 10:59 PM To: [log in to unmask] Subject: Re: [FSL] Asking for your help about running bedpostx on SGE The username of SGE on machine A and B are both sgeadmin. When I run bedpostx, I was logging in A as root. I do not know what is causing the Permission denied before. So I will use chmod -R 777 in the future if the similar problem come up. I have 8 CPUs on B, so I can just modify the all.q, long.q, verylong.q etc and change the parameter "slot" from 1 to 8, to make all the 8 CPUs work, right?