I set up SGE this week and tried to run bedpostx, but some problems come up
and you help will be highly appreciated.
I set up SGE on two machines, namely A and B, each have 8 CPUs with
platform CentOS 5 (AMD64). I set A as the qmaster, also as execd, and I set B as
execd, too. The setup was done according to the guide on your website
(ajanke), which goes well. After set up, I tried a test task
(/sge/examples/simple.sh), which goes well, too.
Then, I tried to run bedpostx for one sigle subject data. The data is
uploaed to A, and submit. The job was distributed to the 8 CPUs of A
immediately, however, when it is distributed to B, the job went Error. The
message showed that: can't chdir to /home/<mydata>, No such file or
directory. By using qstat, I can see that all the 8 CPUs of A is running
bedpostx, but not on B. It seems that B can not see the data on A which was
submitted for bedposxt.
All the setup and job submit are done by root.
How can I fix this problem and make use of all the 16 CPUs on A and B when
doing bedpostx?
