Well this is running on a cluster under CentOS. We use SGE and I think default is 2G RAM per job but I could add up to 8G...<div>I will try this and get back to you - thanks!<br><div><br>Miguel</div><div><br></div><div><br>
</div><div><br><div class="gmail_quote">On Thu, Oct 29, 2009 at 9:53 AM, Stephen Smith <span dir="ltr">&lt;<a href="mailto:[log in to unmask]"><a href="/cgi-bin/wa-jisc.exe?LOGON=A3%3Dind0910%26L%3DFSL%26E%3Dquoted-printable%26P%3D2731776%26B%3D--00504502d057b769e90477160e64%26T%3Dtext%252Fhtml%3B%2520charset%3DISO-8859-1%26pending%3D" target="_parent" >[log in to unmask]</a></a>&gt;</span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
<div style="word-wrap:break-word">HI - hard to tell, most likely FNIRT failed because of a lack of RAM.   How much RAM / swap do you have?   what kind of computer / OS are you running?<div><br></div><div>Cheers.<br><div><br>
</div><div><div><div></div><div class="h5"><br><div><div>On 28 Oct 2009, at 16:46, Miguel Burgaleta wrote:</div><br><blockquote type="cite">Update: I have already found the config-file --it is where it is supposed to be.<div>
Any suggestions?<br><br></div><div>Thanks</div><div>Miguel</div><div><br></div><div><br><div class="gmail_quote">On Wed, Oct 28, 2009 at 5:17 PM, Miguel Burgaleta <span dir="ltr">&lt;<a href="mailto:[log in to unmask]" target="_blank"><a href="/cgi-bin/wa-jisc.exe?LOGON=A3%3Dind0910%26L%3DFSL%26E%3Dquoted-printable%26P%3D2731776%26B%3D--00504502d057b769e90477160e64%26T%3Dtext%252Fhtml%3B%2520charset%3DISO-8859-1%26pending%3D" target="_parent" >[log in to unmask]</a></a>&gt;</span> wrote:<br>
 <blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><br><div>Hello FSLers,</div><div><br></div><div>I have run successfully tbss_1_preproc but I am getting the following message when trying to execute tbss_2_reg:</div>
 <div><br></div><div>___________________________________________________________________________</div> <div><div>Cannot find config-file FA_2_FMRIB58_1mm</div><div>** ERROR (nifti_image_read): failed to find header file for &#39;17250_FA_FA_to_target_warp</div>
<div>** ERROR: nifti_image_open(17250_FA_FA_to_target_warp): bad header info</div> <div>Error: failed to open file 17250_FA_FA_to_target_warp</div><div>Cannot open volume 17250_FA_FA_to_target_warp for reading!</div><div>
** ERROR (nifti_image_read): failed to find header file for &#39;17250_FA_FA_to_target_warp</div> <div>** ERROR: nifti_image_open(17250_FA_FA_to_target_tmp): bad header info</div><div>Error: failed to open file 17250_FA_FA_to_target_tmp</div>
<div>ERROR: Could not open image 17250_FA_FA_to_target_tmp</div><div>Image Exception : #22 :: Failed to read volume 17250_FA_FA_to_target_tmp</div> <div>terminate called after throwing an instance of &#39;RBD_COMMON::BaseException&#39;</div>
<div>/usr/local/fsl-4.1.0-1_64bit/bin/fsl_reg: line 144: 28854 Aborted           </div><div><span style="white-space:pre">	</span>(core dumped) ${FSLDIR}/bin/fslstats ${I2R}_tmp -M -P 50 &gt; ${I2R}_warp.msf</div> <div>___________________________________________________________________________</div>
<div><br></div><div>I guess it isn&#39;t able to find the config-file FA_2_FMRIB58_1mm? What is the standard path to that file?</div><div> <br></div><div>Also, what files should I expect to be generated after each tbss step? </div>
<div><br></div><div>Thanks in advance!</div><div>Miguel</div></div> </blockquote></div><br></div></blockquote></div><br></div></div><div class="im"><div> <span style="border-collapse:separate;color:rgb(0, 0, 0);font-family:Helvetica;font-size:medium;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;text-align:auto;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px"><div>
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