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Hi, What coordinates are you using? I believe (Brian can correct me if I'm wrong) that FIRST vtk meshes use mm coordinates formed by multiplying the voxel coordinate by the size of the voxel in mm. If this is different from what you are using then that would most likely be the problem. All the best, Mark On 16 Oct 2009, at 14:40, John wrote: > Hi, > > I've produced some .vtk meshes using ITKsnap and I'd like to view > them in > FSLview. My vtk meshes were created in native space in vtk, and my > underlying nifti image is in native format too. When I load my > ITKsnap, vtk > mesh into the 3D fslview it appears displaced? Can anyone help me > out here, > where am I going wrong? > > Many thanks > John >