Hi,
I'm reposting this post because I misspoke and said 3D instead of 4D nii files:

I have recently downloaded all of the most recent updates for spm, but I am still having difficulty using dartel to normalize my 4D nii BOLD data.  I cannot list how many timepoints there are during file selection like you can in during other processing steps so when I'm setting up the batch it only has my BOLD images listed as one image.  This seemed to be ok, because it listed all of the correct dimensions while it was running the normalization.  After it's finished, however, only the first image of the 3D set normalized correctly (correct voxel size and orientation) and all the others are in the original voxel size and are flipped in the y direction.  

The import and create template ran just fine, and the output looks great, so suggestions would be very appreciated!!

Thanks,

Kim Celone
Center for Memory and Brain
Boston University