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Hi,
I'm reposting this post because I misspoke and said 3D instead of 4D nii
files:

I have recently downloaded all of the most recent updates for spm, but I am
still having difficulty using dartel to normalize my 4D nii BOLD data.  I
cannot list how many timepoints there are during file selection like you can
in during other processing steps so when I'm setting up the batch it only
has my BOLD images listed as one image.  This seemed to be ok, because it
listed all of the correct dimensions while it was running the
normalization.  After it's finished, however, only the first image of the 3D
set normalized correctly (correct voxel size and orientation) and all the
others are in the original voxel size and are flipped in the y direction.

The import and create template ran just fine, and the output looks great, so
suggestions would be very appreciated!!

Thanks,

Kim Celone
Center for Memory and Brain
Boston University