Saad,
The script ran with interesting results. The terminal output lists "0 slices processed" a number of times and resulted in the following error:
/usr/local/fsl-latest/bin/bedpostx: line 219: 10929 Terminated ${subjdir}.bedpostX/monitor. Also, the data_slice and nodif_brain_mask_slice files are still in the original bedpost directory. However, the dyads seem correct and I was able to run probtrackX on the data.
Thanks,
Laura
---------------------------------
Laura Danielian
Biomedical Engineer
National Institutes of Health
Building 10 CRC Room 7-5753
Bethesda, MD 20892
301-496-2168
________________________________
From: Saad Jbabdi <[log in to unmask]>
Reply-To: FSL - FMRIB's Software Library <[log in to unmask]>
Date: Wed, 19 Aug 2009 09:36:34 -0400
To: <[log in to unmask]>
Conversation: [FSL] bedpostx error
Subject: Re: [FSL] bedpostx error
Hi Laura,
Are you using parallel or serial processing? (i.e. is the SGE_ROOT
environment variable set?).
Can you use this script instead (on clean subject directories) and
tell me what happens?
Cheers,
Saad.
