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Thanks Tom

 

 
I do not get namefile_all_fast_firstseg.nii.gz 


I do not get the volume of the hippocampus

again perform the steps, 

step 1:
 
run_first_all image.nii.gz 4 output
(
I use the number 4 in boundary_threshold that in this instance for example , but this has something to do with 
http://www.fmrib.ox.ac.uk/fsl/first/cma_subcortical_label.html
)

 

step 2:

output...:
 
 output_L_Accu.vtk
 output_L_Amyg.vtk
 output_L_Hip.vtk
 ..

 (but all archives extension = .vtk & .bvars

 and a single file nii.gz)

 

 

 

output_to_std.nii.gz
 
 what is the error?


Thank you very much for your time,
Yours sincerely, Nico 
 
FSL 4.1.2

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