HI - no, see the very top of your logfile - your original input data isn't valid - it looks like your file has been corrupted as it doesn't contain enough data according to the header. Cheers. On 14 Aug 2009, at 22:45, Mona Lisa Chanda wrote: > Hi, > > I've tried to run the same FEAT analysis 3 times and keep getting > error > messages. There doesn't appear to be anything wrong with the input > files or > the preprocessing (filtered functional data looks good). But, the > stats still > aren't running properly. I've attached the log file, if anybody > knows what the > problem is or how to fix it, please let me know. > > Thanks! > Mona > > Progress Report / Log > Started at Wed Feb 1 18:54:27 CST 2006 > Feat main script > > > > /bin/cp /tmp/feat_KHTnrg.fsf design.fsf > > /usr/local/fsl/bin/feat_model design > > mkdir .files;cp /usr/local/fsl/doc/fsl.css .files;ln -s /usr/local/ > fsl/doc/images .files/images > > /usr/local/fsl/bin/fsl_sub -T 24 -l logs -N feat2_pre /usr/local/ > fsl/bin/feat /home/mona/Endo/pat009/Scan1/sp1_7pt_lowpass_full.feat/ > design.fsf -D /home/mona/Endo/pat009/Scan1/sp1_7pt_lowpass_full.feat > -I 1 -prestats > 23579 > > /usr/local/fsl/bin/fsl_sub -T 24 -l logs -N feat3_film -j 23579 / > usr/local/fsl/bin/feat /home/mona/Endo/pat009/Scan1/ > sp1_7pt_lowpass_full.feat/design.fsf -D /home/mona/Endo/pat009/Scan1/ > sp1_7pt_lowpass_full.feat -I 1 -film > 23580 > > /usr/local/fsl/bin/fsl_sub -T 0 -l logs -N feat4_post -j 23580 /usr/ > local/fsl/bin/feat /home/mona/Endo/pat009/Scan1/ > sp1_7pt_lowpass_full.feat/design.fsf -D /home/mona/Endo/pat009/Scan1/ > sp1_7pt_lowpass_full.feat -poststats 0 0 > 23581 > > /usr/local/fsl/bin/fsl_sub -T 30 -l logs -N feat5_reg -j 23579 /usr/ > local/fsl/bin/feat /home/mona/Endo/pat009/Scan1/ > sp1_7pt_lowpass_full.feat/design.fsf -D /home/mona/Endo/pat009/Scan1/ > sp1_7pt_lowpass_full.feat -I 1 -reg > 23582 > > /usr/local/fsl/bin/fsl_sub -T 15 -l logs -N feat4_post -j > 23581,23582 /usr/local/fsl/bin/feat /home/mona/Endo/pat009/Scan1/ > sp1_7pt_lowpass_full.feat/design.fsf -D /home/mona/Endo/pat009/Scan1/ > sp1_7pt_lowpass_full.feat -poststats 1 0 > 23583 > > /usr/local/fsl/bin/fsl_sub -T 1 -l logs -N feat5_stop -j > 23579,23580,23583,23582 /usr/local/fsl/bin/feat /home/mona/Endo/ > pat009/Scan1/sp1_7pt_lowpass_full.feat/design.fsf -D /home/mona/Endo/ > pat009/Scan1/sp1_7pt_lowpass_full.feat -stop > 23584 > > > -------------------------------------------------------------------------------- > Prestats > > > /usr/local/fsl/bin/fslmaths /home/mona/Endo/pat009/Scan1/sp1 > prefiltered_func_data -odt float > Total original volumes = 244 > Deleting 4 volume(s) - BE WARNED for future analysis! > > /usr/local/fsl/bin/fslroi prefiltered_func_data > prefiltered_func_data 4 240 > ++ WARNING: nifti_read_buffer(prefiltered_func_data.nii.gz): > data bytes needed = 589824 > data bytes input = 159706 > number missing = 430118 (set to 0) > > /usr/local/fsl/bin/fslroi prefiltered_func_data example_func 120 1 > > /usr/local/fsl/bin/mcflirt -in prefiltered_func_data -out > prefiltered_func_data_mcf -mats -plots -refvol 120 -rmsrel -rmsabs > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > WARNING::in calculating COG, total = 0.0 > > /bin/mkdir -p mc ; /bin/mv -f prefiltered_func_data_mcf.mat > prefiltered_func_data_mcf.par prefiltered_func_data_mcf_abs.rms > prefiltered_func_data_mcf_abs_mean.rms > prefiltered_func_data_mcf_rel.rms > prefiltered_func_data_mcf_rel_mean.rms mc > > /usr/local/fsl/bin/fsl_tsplot -i prefiltered_func_data_mcf.par -t > 'MCFLIRT estimated rotations (radians)' -u 1 --start=1 --finish=3 -a > x,y,z -w 640 -h 144 -o rot.png > > /usr/local/fsl/bin/fsl_tsplot -i prefiltered_func_data_mcf.par -t > 'MCFLIRT estimated translations (mm)' -u 1 --start=4 --finish=6 -a > x,y,z -w 640 -h 144 -o trans.png > > /usr/local/fsl/bin/fsl_tsplot -i > prefiltered_func_data_mcf_abs.rms,prefiltered_func_data_mcf_rel.rms - > t 'MCFLIRT estimated mean displacement (mm)' -u 1 -w 640 -h 144 -a > absolute,relative -o disp.png > can't read "absrms": no such variable > while executing > "expr int($absrms*100.0)/100.0 " > (procedure "feat5:proc_prestats" line 101) > invoked from within > "feat5:proc_prestats $session " > ("-prestats" arm line 2) > invoked from within > "switch -- [ lindex $argv $argindex ] { > > -I { > incr argindex 1 > set session [ lindex $argv $argindex ] > } > > -D { > incr argindex 1 > set..." > ("for" body line 2) > invoked from within > "for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } { > switch -- [ lindex $argv $argindex ] { > > -I { > incr argindex 1 > set ses..." > (file "/usr/local/fsl/bin/feat" line 137) > > > -------------------------------------------------------------------------------- > Stats > > > mkdir -p custom_timing_files ; /bin/cp /home/mona/Endo/pat009/txt/ > scan1/avg_sp1_7.txt custom_timing_files/ev1.txt > > cp mc/prefiltered_func_data_mcf.par confoundevs.txt > > /usr/local/fsl/bin/feat_model design confoundevs.txt > terminate called after throwing an instance of > 'NEWMAT::IncompatibleDimensionsException' > cat: absbrainthresh.txt: No such file or directory > while executing > "exec sh -c "cat absbrainthresh.txt" " > (procedure "feat5:proc_film" line 57) > invoked from within > "feat5:proc_film $session " > ("-film" arm line 2) > invoked from within > "switch -- [ lindex $argv $argindex ] { > > -I { > incr argindex 1 > set session [ lindex $argv $argindex ] > } > > -D { > incr argindex 1 > set..." > ("for" body line 2) > invoked from within > "for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } { > switch -- [ lindex $argv $argindex ] { > > -I { > incr argindex 1 > set ses..." > (file "/usr/local/fsl/bin/feat" line 137) > > > -------------------------------------------------------------------------------- > Post-stats > > > /usr/local/fsl/bin/contrast_mgr stats design.con > > > An exception has been thrown > design.con is not a valid vest fileTrace: ContrastMgr::Load; > ContrastMgr::run. > > couldn't change working directory to "/home/mona/Endo/pat009/Scan1/ > sp1_7pt_lowpass_full.feat/stats": no such file or directory > while executing > "cd ${FD}/stats" > (procedure "feat5:proc_poststats" line 50) > invoked from within > "feat5:proc_poststats $RERUNNING $STDSPACE " > ("-poststats" arm line 6) > invoked from within > "switch -- [ lindex $argv $argindex ] { > > -I { > incr argindex 1 > set session [ lindex $argv $argindex ] > } > > -D { > incr argindex 1 > set..." > ("for" body line 2) > invoked from within > "for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } { > switch -- [ lindex $argv $argindex ] { > > -I { > incr argindex 1 > set ses..." > (file "/usr/local/fsl/bin/feat" line 137) > couldn't change working directory to "/home/mona/Endo/pat009/Scan1/ > sp1_7pt_lowpass_full.feat/stats": no such file or directory > while executing > "cd ${FD}/stats" > (procedure "feat5:proc_poststats" line 50) > invoked from within > "feat5:proc_poststats $RERUNNING $STDSPACE " > ("-poststats" arm line 6) > invoked from within > "switch -- [ lindex $argv $argindex ] { > > -I { > incr argindex 1 > set session [ lindex $argv $argindex ] > } > > -D { > incr argindex 1 > set..." > ("for" body line 2) > invoked from within > "for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } { > switch -- [ lindex $argv $argindex ] { > > -I { > incr argindex 1 > set ses..." > (file "/usr/local/fsl/bin/feat" line 137) > > > -------------------------------------------------------------------------------- > Registration > > > /bin/mkdir -p reg > > /usr/local/fsl/bin/fslmaths /home/mona/Endo/pat009/Scan1/t1_brain > highres > > /usr/local/fsl/bin/fslmaths /usr/local/fsl/data/standard/ > MNI152_T1_2mm_brain standard > > /usr/local/fsl/bin/flirt -ref highres -in example_func -out > example_func2highres -omat example_func2highres.mat -cost corratio - > dof 7 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -interp > trilinear > > /usr/local/fsl/bin/convert_xfm -inverse -omat > highres2example_func.mat example_func2highres.mat > Cannot read input-matrix > > /usr/local/fsl/bin/slicer example_func2highres highres -s 2 -x 0.35 > sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 > sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 > sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/ > fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + > slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png > example_func2highres1.png ; /usr/local/fsl/bin/slicer highres > example_func2highres -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 > slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 > slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 > slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + > slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png > + sli.png + slj.png + slk.png + sll.png example_func2highres2.png ; / > usr/local/fsl/bin/pngappend example_func2highres1.png - > example_func2highres2.png example_func2highres.png; /bin/rm -f sl?.png > WARNING: input image is empty > > /usr/local/fsl/bin/flirt -ref standard -in highres -out > highres2standard -omat highres2standard.mat -cost corratio -dof 12 - > searchrx -90 90 -searchry -90 90 -searchrz -90 90 -interp trilinear > > /usr/local/fsl/bin/convert_xfm -inverse -omat standard2highres.mat > highres2standard.mat > > /usr/local/fsl/bin/slicer highres2standard standard -s 2 -x 0.35 > sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 > sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 > sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/ > fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + > slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png > highres2standard1.png ; /usr/local/fsl/bin/slicer standard > highres2standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 > slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 > slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 > slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + > slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png > + sli.png + slj.png + slk.png + sll.png highres2standard2.png ; /usr/ > local/fsl/bin/pngappend highres2standard1.png - > highres2standard2.png highres2standard.png; /bin/rm -f sl?.png > > /usr/local/fsl/bin/convert_xfm -omat example_func2standard.mat - > concat highres2standard.mat example_func2highres.mat > Cannot read input-matrix > > /usr/local/fsl/bin/flirt -ref standard -in example_func -out > example_func2standard -applyxfm -init example_func2standard.mat - > interp trilinear > Could not open matrix file example_func2standard.mat > > /usr/local/fsl/bin/convert_xfm -inverse -omat > standard2example_func.mat example_func2standard.mat > Could not open matrix file example_func2standard.mat > Cannot read input-matrix > > /usr/local/fsl/bin/slicer example_func2standard standard -s 2 -x > 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 > sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 > sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/ > fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + > slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png > example_func2standard1.png ; /usr/local/fsl/bin/slicer standard > example_func2standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 > slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 > slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 > slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + > slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png > + sli.png + slj.png + slk.png + sll.png > example_func2standard2.png ; /usr/local/fsl/bin/pngappend > example_func2standard1.png - example_func2standard2.png > example_func2standard.png; /bin/rm -f sl! > ?.png > ** ERROR (nifti_image_read): failed to find header file for > 'example_func2standard' > ** ERROR: nifti_image_open(example_func2standard): bad header info > Error: failed to open file example_func2standard > ERROR: Could not open image example_func2standard > Image Exception : #22 :: Failed to read volume example_func2standard > terminate called after throwing an instance of > 'RBD_COMMON::BaseException' > sh: line 1: 11062 Aborted (core dumped) /usr/local/ > fsl/bin/slicer example_func2standard standard -s 2 -x 0.35 sla.png - > x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y > 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 > slj.png -z 0.55 slk.png -z 0.65 sll.png > > Cannot open sla.png for reading > sh: line 1: 11064 Segmentation fault (core dumped) /usr/local/ > fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + > slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png > example_func2standard1.png > ** ERROR (nifti_image_read): failed to find header file for > 'example_func2standard' > ** ERROR: nifti_image_open(example_func2standard): bad header info > Error: failed to open file example_func2standard > ERROR: Could not open image example_func2standard > Image Exception : #22 :: Failed to read volume example_func2standard > terminate called after throwing an instance of > 'RBD_COMMON::BaseException' > sh: line 1: 11065 Aborted (core dumped) /usr/local/ > fsl/bin/slicer standard example_func2standard -s 2 -x 0.35 sla.png - > x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y > 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 > slj.png -z 0.55 slk.png -z 0.65 sll.png > > Cannot open sla.png for reading > sh: line 1: 11066 Segmentation fault (core dumped) /usr/local/ > fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + > slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png > example_func2standard2.png > > Cannot open example_func2standard1.png for reading > sh: line 1: 11067 Segmentation fault (core dumped) /usr/local/ > fsl/bin/pngappend example_func2standard1.png - > example_func2standard2.png example_func2standard.png > > > > > > > > > > > > > > > > > > > > > > > > > > > > --------------------------------------------------------------------------- Stephen M. Smith, Professor of Biomedical Engineering Associate Director, Oxford University FMRIB Centre FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK +44 (0) 1865 222726 (fax 222717) [log in to unmask] http://www.fmrib.ox.ac.uk/~steve ---------------------------------------------------------------------------