Hi,
look in our servers  list for interaction and contact analysis     http://bip.weizmann.ac.il/toolbox/structure/tertiary.htm#contact
pay attention to PISA which is very good for intermolecular and PIC for intra.  
 
Good luck
Rotem

On 17 Aug, 2009, at 20:13, protein.chemist protein.chemist wrote:

Hello All,

Can anyone tell me what are the programs used to find out the different interactions in a protein.
I am talking about both intra and intermolecular interactions.

Thanks in advance.

Mariah



--
Mariah Jones
Department of Biochemistry
University of Florida



Rotem Sertchook, Ph.D.
Bioinformatics Unit, Biological Services
Weizmann Institute of Science,
Rehovot 76100, Israel.