Dear Eric,
your spmjob.m should look like this
addpath('/usr/local/packages/MATLAB/spm8/');
spm('defaults','fmri') % Set defaults
spm_jobman('initcfg'); % Initialise batch system
spm_get_defaults('cmdline',true); % Use cmdline mode
spm_jobman('run','/home/eric/experiments/ATD.02/Analysis/Conn/20080709_34595/realigntest.m');
In SPM5, the main purpose of spm_jobman('run_nogui',...) was to disable
the job manager GUI. This is obsolete in SPM8. Some control over
graphics output during SPM8 computations is possible by setting the
'cmdline' default to true (either by editing spm_defaults.m, or via the
code above). This might not work in all cases, though...
Hope this helps,
Volkmar
<https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind0907&L=SPM>
