Print

Print


Hi all,
I'm doing some tractography using probtrackx and have gotten nice results.  
However, when I put a waypoint mask in an area where the tracts pass (to 
refine the tractography), I don't get an image.  Has anyone else had this 
experience?  The command I used was:

/home/matt/fsl4.1/bin/probtrackx --mode=seedmask -
x /home/matt/TRIO/090522/DICOM/09052216/41270000/dti2.bedpostX/lpcc.nii.
gz -V 1 -l -f --modeuler -c 0.2 -S 2000 --steplength=0.5 -P 5000 --
avoid=/home/matt/TRIO/090522/DICOM/09052216/41270000/dti2.bedpostX/exc
lude.nii.gz --forcedir --opd -
s /home/matt/TRIO/090522/DICOM/09052216/41270000/dti2.bedpostX/./merge
d -
m /home/matt/TRIO/090522/DICOM/09052216/41270000/dti2.bedpostX/./nodif_
brain_mask --dir=l_cingulate --waypoints=l_cingulate/waypoints.txt

Thanks,
Matt