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Hi Saad Thanks a lot Regards Jürgen On [DATE], "Saad Jbabdi" <[ADDRESS]> wrote: > Hi Jürgen, > > No it uses this value to threshold the mean_FA_skeleton map, uses FA > to project onto this skeleton, then projects non_FA data (e.g. MD) > using the same projection. > > Cheers, > Saad. > > > On 16 Jun 2009, at 10:28, Jürgen Hänggi wrote: > >> Dear FSL experts >> >> When running tbss_non_FA on the MD maps, the script calls the >> thresh.txt >> file from the former normal (FA) analysis. >> Does it use this value, e.g. 0.2, as the threshold for the MD skeleton >> projection? >> >> Thanks >> Regards >> Jürgen >> >> ---------------------------------------------------------------------------- >> Juergen Haenggi >> Ph.D. (Dr. des.) >> Division Neuropsychology >> Institute of Psychology >> University of Zurich >> Binzmuehlestrasse 14, PO Box 25 >> 8050 Zurich, Switzerland >> 0041 44 635 73 97 (phone office) >> 0041 76 445 86 84 (phone mobile) >> 0041 44 635 74 09 (fax office) >> BIN 4.D.04 (office room number) >> j.haenggi[at]psychologie.uzh.ch (email) >> http://www.psychologie.uzh.ch/neuropsy/ (website) >> http://www.juergenhaenggi.ch (private website) >> >> This e-mail (and any attachment/s) contains confidential and/or >> privileged >> information. If you are not the intended recipient (or have received >> this >> e-mail in error) please notify the sender immediately and destroy this >> e-mail. Any unauthorised copying, disclosure or distribution of the >> material in this e-mail is strictly forbidden. >> ---------------------------------------------------------------------------- >> > > -- > Saad Jbabdi > Oxford University FMRIB Centre > > JR Hospital, Headington, OX3 9DU, UK > +44 (0) 1865 222545 (fax 717) > www.fmrib.ox.ac.uk/~saad ---------------------------------------------------------------------------- Juergen Haenggi Ph.D. (Dr. des.) Division Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi[at]psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website) This e-mail (and any attachment/s) contains confidential and/or privileged information. If you are not the intended recipient (or have received this e-mail in error) please notify the sender immediately and destroy this e-mail. Any unauthorised copying, disclosure or distribution of the material in this e-mail is strictly forbidden. ----------------------------------------------------------------------------