On Thu, Apr 30, 2009 at 7:47 PM, Emma Liang <[log in to unmask]> wrote:

Thanks for answering. What is Apply_XFM? I din not find it.
What I'm doing is using GingerALE transfer the FSL MNI coordinates to Talairach, then Talairach to SPM MNI again. But don't know the reason of difference, so dont't know whether it is correct.

Cheers,
Emma

On Fri, May 1, 2009 at 10:22 AM, David Gutman <[log in to unmask]> wrote:

What I wound up doing is put the MNI152_T1_2mm and the FSL template in the same directory, and use a 6DOF FLIRT transformation to generate a transformation matrix from SPM-->FSL. The underlying brains/spaces are the same, but the padding on the images is different.... so you can just calculate the matrix automatically and then use the Apply_XFM program to convert whatever images you need from FSL-->SPM (and vice versa if you invert the matrix).

dg

On Thu, Apr 30, 2009 at 8:08 PM, Emma Liang <[log in to unmask]> wrote:

Hi,

Could anyone tell me why and what coordinate difference between FSL and SPM on both using MNI standard as template. When I use GingerALE to transfer, there are different choices on them.

Best regards,
Emma

--
David A Gutman, M.D. Ph.D.
Department of Psychiatry & Behavioral Sciences
Emory University School of Medicine