Soory, my mistake. I wanted to post this in phenixbb. Raja ----- Forwarded Message ---- From: Raja Dey <[log in to unmask]> To: [log in to unmask] Sent: Tuesday, 26 May, 2009 12:25:58 PM Subject: create cif for Zn atom Dear Friends, I have Zn atoms in my pdb file. So, I think I need to run elbow to create the cif otherwise refinement stops. I did the following and got the error as follows: phenix.elbow generate_easy_r4.pdb --do-all ------------------------------------------------------------------------------ electronic Ligand Builder & Optimisation Workbench (eLBOW) 1.4 3 - Nigel W. Moriarty ([log in to unmask]) ------------------------------------------------------------------------------ Random number seed: 664322001 0:00 Parsing Parsing Parsing Parsing Parsing Parsing Parsing Parsing Parsing P No molecule read Use --all-residues to view residues if this is a PDB file Can anyone suggests at this point, what I should do? Thanking you in advance... Raja ________________________________ Cricket on your mind? Visit the ultimate cricket website. Enter now! Cricket on your mind? Visit the ultimate cricket website. Enter http://beta.cricket.yahoo.com