Thanks Joost,
That's very encouraging.
Just to follow up on what I said about packages being available, I've
had a quick scan and found that FC10 has the following runtime packages:
qt3
vtk
vtk-qt
boost
NB. You'd still need to build Qwt (or continue using our CentOS one)
as the FC qwt package is for version 5 which I haven't ported to yet.
And if you want to re-compile fslview you'll also need:
qt3-devel
vtk-devel
boost-devel
and a Qwt developer environment as per my instructions online.
Given that it is the 3D viewer which is breaking I might try just the
qt3, vtk and vtk-qt runtime packages with our distro fslview first.
On 17 Apr 2009, at 11:49, j janssen wrote:
> Hi,
>
> we had a very similar problem. we followed the instructions for
> compiling FSLVIEW from the FSL website. important: FC10 comes with
> GCC 4.3 but for FSL we needed GCC 3.4 (we installed it using Yum).
> once we used GCC 3.4 for compilation the 3D viewer worked under FC10.
>
> best,
> -joost
>
>
> On Fri, Apr 17, 2009 at 12:36 PM, David Flitney <[log in to unmask]
> > wrote:
> Hi,
>
> I'm afraid we can't help a lot here. We don't really support/
> recommend releases like FC since the 6 monthly release cycle and
> short maintenance life means deployment and upgrading would be a
> never-ending task. We chose CentOS as being a "largely compatible"
> while enterprise suitable OS. I'm sorry our fslview binaries don't
> work fully for you.
>
> A native build might work. You'll find my compilation notes at: http://www.fmrib.ox.ac.uk/fsl/fslviewbuild
>
> There may also be some useful shortcuts: I've noticed that some
> distros now have vtk, boost and even qwt runtime and devel packages
> and I'd recommend using those if you have access to them. You might
> even try installing the runtime packages and see if our fslview
> binary will work with them instead of the bundled CentOS ones.
>
> On 17 Apr 2009, at 10:26, John wrote:
>
>> Relating to my previous post, if I open fslview from a terminal,
>> when the
>> the 3D viewer leads to the closure of fslview the output in the
>> terminal
>> window is as follows:
>>
>> /usr/local/fsl/bin/fslview: line 6: 4074 Segmentation fault
>> ${FSLDIR}/bin/fslview_bin $@
>>
>> Don't know if that helps with the fault finding?
>>
>> Thanks
>> J
>>
>
> --
> Dave Flitney, IT Manager
> Oxford Centre for Functional MRI of the Brain
> E:[log in to unmask] W:+44-1865-222713 F:+44-1865-222717
> URL: http://www.fmrib.ox.ac.uk/~flitney
>
>
>
>
--
Dave Flitney, IT Manager
Oxford Centre for Functional MRI of the Brain
E:[log in to unmask] W:+44-1865-222713 F:+44-1865-222717
URL: http://www.fmrib.ox.ac.uk/~flitney
