Dear Isabelle,
the documentation in cfg_getfile/spm_select says that the frames
argument is currently unused. I have updated the help text in 'File
Filter' to clarify this. Also, there will be a new SPM utility that
allows to 'Expand image frames' - once it is released you should use
this to read the 4D-image headers and create a list of image frames.
Volkmar
Am Freitag, den 27.03.2009, 15:02 +0100 schrieb Volkmar Glauche:
> Dear Isabelle,
>
> most modules in BasicIO work on entire files, not frames. Moreover, you
> may have discovered a mismatch between documentation and real behaviour:
> cfg_getfile('filter'...) doesn't use the frames argument at all.
> I'll try to fix this. Meanwhile, the only workaround is to start your
> batch with "Realign..." and select the frames there directly.
>
> Volkmar
>
> Am Freitag, den 27.03.2009, 13:15 +0100 schrieb Isabelle Faillenot:
> > Hi everybody !
> >
> > I am trying to batch an analysis using spm8b.
> > I have 4D nifti images (from Philips) : 118 volumes
> > I want to make a 'realign' from volume 3 to 118 but I did not succeed !
> > in the realign module, there is no mean to choose the frames, and if I use the
> > file selector module (as shown in the image below), the realign module still
> > used all frames
> >
> > Did I miss something ?
> > Thank you !
> > Isabelle
> >
> > MATLAB Version 7.6.0.324 (R2008a)
> > Statistical Parametric Mapping Version 2660 (SPM8b)
> >
> > Isabelle Faillenot
> > Ingénieur hospitalier
> > service de neurologie
> > hôpital Nord
> > 42055 Saint-Etienne cédex 2
> >
--
Volkmar Glauche
-
Department of Neurology [log in to unmask]
Universitaetsklinikum Freiburg Phone 49(0)761-270-5331
Breisacher Str. 64 Fax 49(0)761-270-5416
79106 Freiburg http://fbi.uniklinik-freiburg.de/
