Hi,
It is quite interesting to know more about dicom2nifti. And I just encountered a strange problem, too.
For 3d images, the output from dcm2nii generally includes 3 files: t1*.nii.gz, ot1*.nii.gz, cot1*.nii.gz. ot1* is from reorienting t1* and cot1* just gets some neck-clip. But on one subject of my data, the output has only t1*.
I suspect that some information writtern in dicom files of this subject is abnormal, which leads to the change of dcm2nii result. Although I could reorient it by hand, I am still puzzled where it breaks down.
Thanks for any suggestion!
Chun Meng
2009/3/18 Mark Jenkinson
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Hi,
Development sequences are tricky in this way.
It really matters what information gets written into the dicom files.
Glad you found a solution.
All the best,
Mark
