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Yes I have:) I am not sure exactly what kind of information from the dicom files that these programs use. But based on the problems I get, I suspect that they don`t sort the images based on header info, but instead depend on the sequence that the dicom images are stored in. Do you know anything about that? Hallvard --------------------------------------------------- Siterer Mark Jenkinson <[log in to unmask]>: > Hi, > > We have had good results from using mri_convert (from FreeSurfer) > or dcm2nii (from mricron). Have you tried these? > > All the best, > Mark > > P.S. You can only attach very small files to emails that go to the > whole FSL list, to avoid everyone getting full mailboxes. > > > On 18 Mar 2009, at 09:05, Hallvard Røe Evensmoen wrote: > >> I have tried to convert a series of 3d dicom images into nifti using >> dicom2nii, MRIConverter and LONI debabeler. The best I get is all the >> slices from the different volumes added together with dim3=1 (image >> attached). Anyone got a better suggestion than writing a scipt that first >> uses fslmerge to merge the 32 slices along the z axis to get the volumes and >> finally use fslmerge to merge the volumes in time. >> >> >> Yours sincerely >> >> Hallvard Røe Evensmoen >>