Print

Print
Hi,

Thanks a lot.

But my question is that when I use fslview with dti_FA and fdt_path images, isn't it supposed to be like color map on the reference? I was expecting something like that, but mine is not like that. So I am wondering whether my FA image has some problem. What does normally FA image look like?

Thanks,

Mi Jung

On Mon, Mar 16, 2009 at 2:19 PM, Markus Gschwind <[log in to unmask]> wrote:
Hi!

It depends on if you want to present the path in front of the subjects dti_FA or in front of the MNI template.
In the first case it is very easy:
fslview <path>dti_FA.nii.gz -b 0,1 <path>fdt_path.nii.gz

In the second case you 'll need to register the paths first to the MNI template (using FLIRT or applaywarp).

Cheers,
Markus


2009/3/16 Mi Jung Kim <[log in to unmask]>

Hi,

I have fdt_paths images. I wanted to use fslview to visualize path images.
Like many examples shown in websites, I wanted to place my path images on
reference image with color code. Can I do that or I miss some processing
procedures?

Thanks,

Mi Jung



--
Dr. med. Markus Gschwind, M.D.
Laboratory for Neurology and Imaging of Cognition
Dept of Neurosciences
University Medical Center (CMU)
1 Michel-Servet - 1211 GENEVA - CH

Tel 0041 (0) 22 379 5324
Fax 0041 (0) 22 379 5402
email: [log in to unmask]
http://labnic.unige.ch