Hello~ all~~
I'm processing huge DTI data by FSL in fedora10(linux 64bit)
but, i have a problem in tbss stage 3 (tbss_3_postreg)
i used below command
$ tbss_3_postreg -S
i have the error message like this~~ .
#####################################
merging all upsampled FA images into single 4D image
Image Exception : #99 :: Out of memory
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/usr/local/fsl/bin/tbss_3_postreg: line 164: 12372 Aborted
${FSLDIR}/bin/fslmerge -t ../stats/all_FA `$FSLDIR/bin/imglob
*_FA_to_target.*`
creating valid mask and mean FA
** ERROR (nifti_image_read): failed to find header file for 'all_FA'
** ERROR: nifti_image_open(all_FA): bad header info
Error: failed to open file all_FA
Cannot open volume all_FA for reading!
** ERROR (nifti_image_read): failed to find header file for 'all_FA'
** ERROR: nifti_image_open(all_FA): bad header info
Error: failed to open file all_FA
Cannot open volume all_FA for reading!
** ERROR (nifti_image_read): failed to find header file for 'all_FA'
** ERROR: nifti_image_open(all_FA): bad header info
Error: failed to open file all_FA
Cannot open volume all_FA for reading!
skeletonising mean FA
** ERROR (nifti_image_read): failed to find header file for 'mean_FA'
** ERROR: nifti_image_open(mean_FA): bad header info
Error: failed to open file mean_FA
ERROR: Could not open image mean_FA
Image Exception : #22 :: Failed to read volume mean_FA
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/usr/local/fsl/bin/tbss_3_postreg: line 182: 12381 Aborted
$FSLDIR/bin/tbss_skeleton -i mean_FA -o mean_FA_skeleton
now view mean_FA_skeleton to check whether the default threshold of 0.2
needs changing, when running:
tbss_4_prestats <threshold>
################################
i think this is memory error.
The data i used
Normal : 84 subjects
SVD : 47 subjects
84 vs. 47
Is there any limitation about #of subjects in tbss??
plz solve this problem~!
thank you ~!!!
