Perhaps reducing the image FOV would help
(crop the extra empty space around the image), however you are going to be very
limited with the 32bit virtual machine (and I am not aware of a 64-bit
version). You should make sure that your virtual machine has access to at
least 3GB of the system RAM (you will only be able to allocate 2GB to any given
process at 32bit, but the extra 1GB can be allocated to system processes. For
any kind of intensive FSL processing it is certainly better to run FSL in an
operating system in which it can run natively, for example 64bit Linux or Mac. I
recommend Ubuntu if you decide to go the Linux route.
Peace,
Matt.
From: FSL - FMRIB's
Software Library [mailto:[log in to unmask]] On
Behalf Of Jayanth Kolar
Sent: Friday, March 13, 2009 2:05
PM
To: [log in to unmask]
Subject: Re: [FSL] FAST - Out of
Memory Error
Hi Rolf,
Yes. I have betted the images and the bet results are accurate.
Thanks,
Jayanth
On Fri, Mar 13, 2009 at 1:37 PM, Rolf Heckemann <[log in to unmask]>
wrote:
Hi Jayanth
Not sure about your architecture, but I have seen this error with
problematic data sets. Is your image brain-extracted?
Rolf
On Fri, Mar 13, 2009 at 05:34:43PM +0000, Jayanth Kolar wrote:
>
> Hi All,
> I am running the FSL FAST gui (with apriori maps for
initialization
> and final segmentation) on a 64 bit Windows machine using
Virtual
> Machine FSL_VM_32. I upgraded to 6GB RAM from 2GB but I
am still
> getting the following out of memory error when I try to
segment a
> 512x512x110 image.
> Image Exception : #99 :: Out of memory
> terminate called after throwing an instance of
> 'RBD_COMMON::BaseException'
> Does anyone else have the same trouble ? Please suggest a
suitable fix
> because the RAM doesnt seem to be the problem.
> Also if it is a problem with the 32 bit virtual machine,
please let me
> know where I can download the 64bit FSL virtual machine ? I
couuld
> only find the download link for FSL_VM_32 on the downlaods
page.
> Thanks for your help. I appreciate it.
> Jayanth.
--
Rolf A Heckemann, PhD
Research Associate
Division of Neuroscience and Mental Health
MRC Clinical Sciences Centre
1236969289
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--
Jayanth Kolar
Graduate Research Assistant
Physiological Imaging and Modeling Lab
1-408-398-0097
http://www.ece.uic.edu/~jkolar