Yes, it sounds like you have a version which still had the bvals bug.

Just add a carriage return at the end of your bvals file and that should solve the problem.

Saad.

On 10 Mar 2009, at 18:00, Mi Jung Kim wrote:

Hi,

I am using FSL4.0 on Mac.

Thanks,

Mi Jung

On Tue, Mar 10, 2009 at 10:19 AM, Saad Jbabdi <[log in to unmask]> wrote:

I suspect this is because you need to add a carriage return at the end of your bvals file (which version of FSL are you using?)

Saad.


On 10 Mar 2009, at 16:29, Mi Jung Kim wrote:

Hi,

I have been working capillary phantom for muscle DTI.

I just was able to run all procedures, but after dtifit, outputs are
blank..Do you have any thought on that?

One more question right now is that since I am dealing with phantom data, do
I still go though all steps before probtrack?


Thanks,

Mi Jung

Saad Jbabdi
Oxford University FMRIB Centre

JR Hospital, Headington, OX3 9DU, UK
+44 (0) 1865 222545  (fax 717)
www.fmrib.ox.ac.uk/~saad

Saad Jbabdi

Oxford University FMRIB Centre

JR Hospital, Headington, OX3 9DU, UK

+44 (0) 1865 222545  (fax 717)

www.fmrib.ox.ac.uk/~saad