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Hi, Thanks a lot. But my question is that when I use fslview with dti_FA and fdt_path images, isn't it supposed to be like color map on the reference? I was expecting something like that, but mine is not like that. So I am wondering whether my FA image has some problem. What does normally FA image look like? Thanks, Mi Jung On Mon, Mar 16, 2009 at 2:19 PM, Markus Gschwind <[log in to unmask]>wrote: > Hi! > > It depends on if you want to present the path in front of the subjects > dti_FA or in front of the MNI template. > In the first case it is very easy: > fslview <path>dti_FA.nii.gz -b 0,1 <path>fdt_path.nii.gz > > In the second case you 'll need to register the paths first to the MNI > template (using FLIRT or applaywarp). > > Cheers, > Markus > > > 2009/3/16 Mi Jung Kim <[log in to unmask]> > > Hi, >> >> I have fdt_paths images. I wanted to use fslview to visualize path images. >> Like many examples shown in websites, I wanted to place my path images on >> reference image with color code. Can I do that or I miss some processing >> procedures? >> >> Thanks, >> >> Mi Jung >> > > > > -- > Dr. med. Markus Gschwind, M.D. > Laboratory for Neurology and Imaging of Cognition > Dept of Neurosciences > University Medical Center (CMU) > 1 Michel-Servet - 1211 GENEVA - CH > > Tel 0041 (0) 22 379 5324 > Fax 0041 (0) 22 379 5402 > email: [log in to unmask] > http://labnic.unige.ch >