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They look all right to me. Why are you saying they are not right? Did you have a look at FA and V1 in fslview? Saad. On 11 Mar 2009, at 15:18, Mi Jung Kim wrote: > Hi, > > These are my outputs from dtifit. > I did a carriage return in bvals. > Are they right? They do not seem to be right values to me. > Any thought? > > Sincerely, > > Mi Jung > computer-four:~/data macadmin$ fslstats dti_FA.nii.gz -R > 0.000000 1.224744 > computer-four:~/data macadmin$ fslstats dti_V1.nii.gz -R > -0.999986 0.999999 > computer-four:~/data macadmin$ fslstats dti_L1.nii.gz -R > -0.000893 0.003149 > computer-four:~/data macadmin$ fslstats dti_L2.nii.gz -R > -0.001136 0.002519 > computer-four:~/data macadmin$ fslstats dti_L3.nii.gz -R > -0.002149 0.002262 > computer-four:~/data macadmin$ fslstats dti_V2.nii.gz -R > -0.999982 0.999999 > computer-four:~/data macadmin$ fslstats dti_V3.nii.gz -R > -0.999986 1.000000 > computer-four:~/data macadmin$ fslstats dti_MD.nii.gz -R > -0.001113 0.002447 > computer-four:~/data macadmin$ fslstats dti_S0.nii.gz -R > 0.000000 16406.000000 > > On Wed, Mar 11, 2009 at 8:01 AM, Mark Jenkinson > <[log in to unmask]> wrote: > Hi, > > Just add a blank line at the end with a text editor. > > All the best, > Mark > > > > On 11 Mar 2009, at 14:49, Mi Jung Kim wrote: > > Hi Sadd, > > How can I add a carriage return? > > Thanks, > > Mi Jung > > On Wed, Mar 11, 2009 at 1:54 AM, Saad Jbabdi <[log in to unmask]> > wrote: > Yes, it sounds like you have a version which still had the bvals bug. > Just add a carriage return at the end of your bvals file and that > should solve the problem. > > Saad. > > On 10 Mar 2009, at 18:00, Mi Jung Kim wrote: > > Hi, > > I am using FSL4.0 on Mac. > > Thanks, > > Mi Jung > > On Tue, Mar 10, 2009 at 10:19 AM, Saad Jbabdi <[log in to unmask]> > wrote: > I suspect this is because you need to add a carriage return at the > end of your bvals file (which version of FSL are you using?) > > Saad. > > > On 10 Mar 2009, at 16:29, Mi Jung Kim wrote: > > Hi, > > I have been working capillary phantom for muscle DTI. > > I just was able to run all procedures, but after dtifit, outputs are > blank..Do you have any thought on that? > > One more question right now is that since I am dealing with phantom > data, do > I still go though all steps before probtrack? > > > Thanks, > > Mi Jung > > > Saad Jbabdi > Oxford University FMRIB Centre > > JR Hospital, Headington, OX3 9DU, UK > +44 (0) 1865 222545 (fax 717) > www.fmrib.ox.ac.uk/~saad > > > Saad Jbabdi > Oxford University FMRIB Centre > > JR Hospital, Headington, OX3 9DU, UK > +44 (0) 1865 222545 (fax 717) > www.fmrib.ox.ac.uk/~saad > > > > > > > > Saad Jbabdi Oxford University FMRIB Centre JR Hospital, Headington, OX3 9DU, UK +44 (0) 1865 222545 (fax 717) www.fmrib.ox.ac.uk/~saad