I understand, thank all for your kind response and suggestions. all the best, ping

Date: Tue, 3 Feb 2009 19:49:46 +0000
From: [log in to unmask]
Subject: Re: [FSL] programming language/tool/script that is compatible with fsl well under linux
To: [log in to unmask]

Hi Ping,
MATLAB is the most popular tool to quickly perform specific calculations. FSL comes with some functions to load and save NIFTII images. Many people use bash shell scripting (available from the *nix command line) in conjunction with fslmaths etc to perform various manipulations of images and other analysis files (see https://www.fmrib.ox.ac.uk/fslcourse/lectures/scripting/all.htm).

Best,
Eugene

2009/2/3 WangPing <[log in to unmask]>

Dear FSL experts,

I am using fsl for a few months and feeling fsl is a really powerful toolkit. I am not an expert of linux and fsl, just curious to know, what programming language/tool I should use under linux environment (that is compatible with fsl well): for example I want to list and read the image volumes processed by fsl, and do some specific calculations. Although FSL can provide lots of calculations, just want to know what the usual method (for example language/tool/script) is to perform some very specific calculations.

Best Regards,
Ping

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--

Eugene Duff

FMRIB Centre,
University of Oxford
John Radcliffe Hospital, Headington OX3 9DU Oxford UK

Ph: +44 (0) 1865 222 739 Fax: +44 (0) 1865 222 717

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