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Is there a carriage return after the last line of both the bvecs and the bvals? Peace, Matt. -----Original Message----- From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf Of Cibu Thomas Sent: Tuesday, February 03, 2009 9:55 AM To: [log in to unmask] Subject: Re: [FSL] Incompatible Dimensions Exception Hello there Here's the output from the data integrity check. Looks fine to me. But DTIfit continues to produce the same error message /autofs/space/bomba_001/users/Cibu/TBSS_ISO/1226_ISO/dti/009/data data_type INT16 dim1 128 dim2 128 dim3 60 dim4 70 datatype 4 pixdim1 2.0000000000 pixdim2 2.0000000000 pixdim3 2.0000002384 pixdim4 1.0000000000 cal_max 0.0000 cal_min 0.0000 file_type NIFTI-1+ /autofs/space/bomba_001/users/Cibu/TBSS_ISO/1226_ISO/dti/009/nodif_brain_mas k data_type INT16 dim1 128 dim2 128 dim3 60 dim4 1 datatype 4 pixdim1 2.0000000000 pixdim2 2.0000000000 pixdim3 2.0000002384 pixdim4 1.0000000000 cal_max 0.0000 cal_min 0.0000 file_type NIFTI-1+ num lines in /autofs/space/bomba_001/users/Cibu/TBSS_ISO/1226_ISO/dti/009/bvals 1 num words in /autofs/space/bomba_001/users/Cibu/TBSS_ISO/1226_ISO/dti/009/bvals 70 num lines in /autofs/space/bomba_001/users/Cibu/TBSS_ISO/1226_ISO/dti/009/bvecs 3 num words in /autofs/space/bomba_001/users/Cibu/TBSS_ISO/1226_ISO/dti/009/bvecs 210 On Mon, 2009-02-02 at 23:05 +0100, Markus Gschwind wrote: > Hi! > > What does it say if you type: > bedpostx_datacheck <your_dtifit_directory> > > Can you post the answere here, please? > > All the best, > Markus > > > > 2009/2/2 Cibu <[log in to unmask]> > > Hello > > I am having some trouble running the DTIFIT > reconstruction tool box. > > The error message says: > > Terminate called after throwing an instance of > 'NEWMAT::IncompatibleDimensionsException' > > I made sure the bval and bvec values are horizontally > ordered. Please see attachment for the files. > > Many thanks in advance for your suggestions > > > > - cibu > > > > > > > > -- > Dr. med. Markus Gschwind, M.D. > Laboratory for Neurology and Imaging of Cognition > Dept of Neurosciences > University Medical Center (CMU) > 1 Michel-Servet - 1211 GENEVA - CH > > Tel 0041 (0) 22 379 5324 > Fax 0041 (0) 22 379 5402 > email: [log in to unmask] > http://labnic.unige.ch > > > > -- > Dr. med. Markus Gschwind, M.D. > Laboratory for Neurology and Imaging of Cognition > Dept of Neurosciences > University Medical Center (CMU) > 1 Michel-Servet - 1211 GENEVA - CH > > Tel 0041 (0) 22 379 5324 > Fax 0041 (0) 22 379 5402 > email: [log in to unmask] > http://labnic.unige.ch