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Hi David, I ran oracdr -file test.lis -batch -log xf -nodisplay -recsuffix=ADV REDUCE_SCIENCE_NARROWLINE_ADV where test.lis contains only a20080106_00036_02_0002.sdf, and the pipeline completed without incident. When test.lis contains a20080106_00029_02_0001.sdf a20080106_00029_02_0002.sdf a20080106_00034_02_0001.sdf a20080106_00034_02_0002.sdf a20080106_00036_02_0001.sdf a20080106_00036_02_0002.sdf I get the error message. Cheers, Jane Jane Buckle wrote: > Hi David, > > I haven't tried reducing these file individually yet, so I don't know > if it is the last one that caused the problem. Oracdr carried out the > initial processing of the 6 files OK, but when it got to the point of > the iterative processing on the group file, it fell over. I am going > to try the individual files again, but I have to wait for oracdr to > finish with the rest of the observations (there are 59 for this > source). I'm processing all of these 59 files 6 at a time, since the > pipeline falls over if I provide a .lis file with more than 6 files in > it. I suspect it will be tomorrow before I'm through with the rest of > the files. > > The final data products from the pipeline are looking really good, > btw! I should also point out that I am running a version of the > pipeline built by Brad, so it should be the latest version, and > includes some GBS QA stuff. > > Cheers, > > Jane > > David Berry wrote: >> On scubadev (and with an up to date smurf), I've just run: >> >> $SMURF_DIR/makecube pixsize=7.2761 crota=40 spread=nearest \ >> tiledims=172 system=icrs autogrid=yes tileborder=2 trimtiles=yes \ >> genvar=tsys inweight=true in=^a.lis out=a >> >> where a.lis contains >> >> /jcmtdata/raw/acsis/spectra/20080106/00036/a20080106_00036_02_0002 >> >> (Jane - is this the file that causes the problems?) >> >> and makecube completed succesfully. So maybe someone (Brad?) could >> take a look inside orac-dr? >> >> David >> >> >> >> 2009/1/14 Jane Buckle <[log in to unmask]>: >> >>> Hi All, >>> >>> Reducing a series of files, I get this error message >>> (a20080106_00036 was >>> the last file provided in the .lis file): >>> >>> a20080106_00036_02_thr001 to a20080106_00036_02_tss001: >>> Removed median time-series signal. >>> a20080106_00036_02_thr002 to a20080106_00036_02_tss002: >>> Removed median time-series signal. >>> >>> Beginning iterative group production. >>> Determining MAKECUBE parameters for RASTER. >>> Determining MAKECUBE parameters for RASTER. >>> Determining MAKECUBE parameters for RASTER. >>> Creating cube...#36 Err: !! SOCK__READSOCK: error on reading from >>> socket >>> #36 Err: Error in obeyw to monolith smurf_mon (task=makecube): 2 >>> Arguments were: pixsize=7.2761 crota=40 spread=nearest params='' >>> tiledims=172 system=icrs autogrid=yes tileborder=2 trimti >>> les=yes genvar=tsys inweight=true >>> in='^/export/scratch/buckle/gbs/pipeline/ngc2024_13co/oractemp91nIIP.lis' >>> >>> out=ga20090113_29_2_cube >>> >>> #36 Err: Monolith smurf_mon seems to be dead. Removing it... >>> Recipe took 309.418 seconds to evaluate and execute. >>> >>> #36 Err: Recipe completed with error status = 2 >>> #36 Err: Continuing but this may cause problems during group processing >>> Pipeline processing complete >>> >>> This was on the last file in the list, and it doesn't look like >>> there is a >>> problem with the observations - but no a*reduced001.sdf files were >>> produced >>> for any files listed in the .lis file: >>> >>> a20080106_00029_02_0001.sdf >>> a20080106_00029_02_0002.sdf >>> a20080106_00034_02_0001.sdf >>> a20080106_00034_02_0002.sdf >>> a20080106_00036_02_0001.sdf >>> a20080106_00036_02_0002.sdf >>> >>> The pipeline is quite happily reducing other observations taken on >>> the same >>> night, but gives this error message whenever I run the pipeline on >>> the files >>> listed above. >>> >>> Regards, >>> >>> Jane >>> >>> -- >>> >>> Dr Jane V. Buckle >>> Astrophysics Group, Cavendish Lab, J J Thomson Avenue, Cambridge CB3 >>> 0HE >>> Tel: +44 (0)1223 337298 >>> >>> >> >> >> >> > -- Dr Jane V. Buckle Astrophysics Group, Cavendish Lab, J J Thomson Avenue, Cambridge CB3 0HE Tel: +44 (0)1223 337298