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Jesper, many thanks! Just a side question, I am wondering if you could recommend a brain label atlas (that is in MNI152 space). My subjects have lesions in white matter (although not appear on T1, but appear on FLAIR, I can register FLAIR to T1 by flirt), so I want to use this label atlas to help compute the lesion volume in some white matter regions. I do not want very detailed white matter atlas, an atlas that can divide the brain into a few regions will be okay. Best, Ping > Date: Mon, 26 Jan 2009 08:25:55 +0000 > From: [log in to unmask] > Subject: Re: [FSL] template for fnirt > To: [log in to unmask] > > Dear Ping, > > > So if I want to set --inwarp I have to edit the config file? can I add > > --inwarp in the command line? > > It will be easiest if you simply add it to the command line, since you > will need to specify a different set of warps for each subject. > > > Suppose I get my final template and begin to normalize the subjects to > > this template, should I use the default config file with --ref=[my > > template], all others are the same as the first time of iteration (during > > creating t he model)? > > Once the template has been created, all the subjects that went into > building the template will already be registered to the template. For > "new" elderly subjects that you collect you will do as you describe above. > > Good luck Jesper _________________________________________________________________ 讲述中国特色文化，体验不同的节日习俗，快来微软春节搜索！ http://chunjie.live.com/?form=PANER01