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Thanks Reza So if I save it as a .fsf file are the design.mat and design.con files created for use in randomize? - Cibu _____ From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf Of Reza Salimi Sent: Tuesday, January 06, 2009 5:05 PM To: [log in to unmask] Subject: Re: [FSL] GLM GUI Hi Cibu, when you run Glm, you'll have two windows, one with the name "General Linear Model" and the other with the name "Glm Setup", you set your EVs and contrasts in the first and save the final design/contrast by pressing the save in "Glm Setup" window. Just FYI, the save one is the one where you set the number of inputs on. cheers On Tue, Jan 6, 2009 at 9:52 PM, Cibu <[log in to unmask]> wrote: Hello Based on previous postings I used the GLM gui to generate the design and contrast files. After entering the inputs, EVs and the contrast, I gather that I need to click on 'save design' to generate the files. Problem is, I don't see a 'save design' button anywhere. Just view design, Efficiency in the GLM console and there is an option to save .fsf files in the GLM setup console. Would greatly appreciate any help regarding this Many thanks Cibu Thomas -- G. Salimi-Khorshidi, D.Phil. Student, Dept. of Clinical Neurology, University of Oxford. [log in to unmask] http://www.fmrib.ox.ac.uk/~reza FMRIB Centre, John Radcliffe Hospital, Headington, Oxford, OX3 9DU Tel: +44 (0) 1865 222466 Fax: +44 (0)1865 222717