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Wayne, I had no problems trying to start analysis after the error and a second attempt to UpdateAll resulted in no errors. I will keep a log of anything that may go wrong. Just wanted to let you know. J ------------------------------------------------------------ Johnny Eugene Croy, Ph.D. Research Associate Wuttke Lab University of Colorado, Boulder Department of Chemistry and Biochemistry UCB 215 Boulder, CO 80309-0215 Lab: (303) 492-2369 Mobile: (303) 304-6069 ------------------------------------------------------------ On Jan 23, 2009, at 8:45 AM, Wayne Boucher wrote: > Hello, > > Zounds. That didn't show up on my Mac or on the Linux box I tried > it on. > I suspect some compilers are more lenient than others. > > The immediate cause is because I've now included the system file > /usr/include/unistd.h because of the fseeko change I made to > accomodate > big data files. And it looks like they have a function called > readlink > which is also used in the Clouds bacus code. > > I've changed the bacus.c name from readlink to readlinkfile so > hopefully > it will be ok for you now. (In particular, I hope it hasn't gotten > confused about what needs compiling and what not. If worse comes to > worse > after the next attempt at an update, if things are not appearing to > compile, then go into ccpnmr2.0/c and type "make".) > > Wayne > > On Fri, 23 Jan 2009, Johnny Croy wrote: > >> Wayne, >> >> Got this error when updating last night. >> >> cc -c -I../../memops/global -I/sw/include/python2.5 -O - >> DDO_NOT_HAVE_MALLOC -fPIC py_midge.c >> cd ../../memops/global; make diag_objects >> cc -c -O -DDO_NOT_HAVE_MALLOC -fPIC diag_dbl.c >> cc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 -o Midge.so >> midge.o py_midge.o \ >> ../../memops/global/python_util.o ../../memops/global/ >> utility.o ../../memops/global/diag_dbl.o -lm >> cc -c -I../../memops/global -I/sw/include/python2.5 -O - >> DDO_NOT_HAVE_MALLOC -fPIC py_cloud_util.c >> cc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 -o CloudUtil.so >> py_cloud_util.o -lm >> cc -c -I../../memops/global -O -DDO_NOT_HAVE_MALLOC -fPIC bacus.c >> bacus.c:244: error: conflicting types for 'readlink' >> /usr/include/unistd.h:474: error: previous declaration of 'readlink' >> was here >> make[1]: *** [bacus.o] Error 1 >> make: *** [clouds] Error 2 >> >> Was using UpdateAll to update from the command line. Any ideas? >> Seems to be a code problem. >> >> J >> >> >> ------------------------------------------------------------ >> Johnny Eugene Croy, Ph.D. >> Research Associate >> Wuttke Lab >> >> University of Colorado, Boulder >> Department of Chemistry and Biochemistry >> UCB 215 >> Boulder, CO 80309-0215 >> >> Lab: (303) 492-2369 >> Mobile: (303) 304-6069 >> ------------------------------------------------------------ >>