Hi Wayne,
Got a funny error opening one of my converted projects. Got a pop up
windows that reads,
Cannot add child - key already in use:
ccp.molecule.ChemComp.StdChemComp"<memops.Implementation.MemopsRoodId:
79065008>:('DNA'.'U')
This also came up in the terminal window.
>>> Error loading file for: <ccp.molecule.ChemComp.StdChemComp
['DNA', 'U']>
Reading: <open file '/Applications/ccpnmr/ccpnmr2.0/data/ccp/molecule/
ChemComp/DNA+U+msd_ccpnRef_2007-12-11-10-13-17_00008.xml', mode 'r' at
0x49c13c8>
Last xml tag read: CHEM.ChemComp.chemAtomSets
Parser state was: handling version compatibility
Object stack was empty
Error during Exo link dereferencing. Object was:
<ccp.molecule.Molecule.MolResidue ['6mer', 6]>
values were: ['msd_ccpnRef_2007-12-11-10-13-16_00002']
tag name was: chemComp
Error loading file for: <ccp.molecule.Molecule.Molecule ['6mer']>
Reading: <open file '/Users/jec/CCPNMR2/SpPot1pN_Bound_DNA_assign/ccp/
molecule/Molecule/6mer
+SpPot1pN_Bound_DNA_assign_user_2008-09-05-17-51-31_00012.xml', mode
'r' at 0x49bff98>
Last xml tag read: _StorageUnit
Parser state was: postprocessing data
Object stack was empty
Error loading file for: <ccp.molecule.MolSystem.MolSystem ['MS1']>
Reading: <open file '/Users/jec/CCPNMR2/SpPot1pN_Bound_DNA_assign/ccp/
molecule/MolSystem/
MS1+SpPot1pN_Bound_DNA_assign_user_2008-09-05-17-51-31_00114.xml',
mode 'r' at 0x49bff08>
Last xml tag read: _StorageUnit
Parser state was: checking validity
Object stack was empty
Error loading file for: <ccp.nmr.Nmr.NmrProject
['SpPot1pN_Bound_DNA_assign']>
Reading: <open file '/Users/jec/CCPNMR2/SpPot1pN_Bound_DNA_assign/ccp/
nmr/Nmr/SpPot1pN_Bound_DNA_assign
+SpPot1pN_Bound_DNA_assign_user_2008-09-05-17-51-31_00117.xml', mode
'r' at 0x3a309f8>
Last xml tag read: NMR.AtomSet.atoms
Parser state was: reading
Current object was: <ccp.nmr.Nmr.AtomSet
['SpPot1pN_Bound_DNA_assign', 1]>
Error loading file for: <ccp.molecule.ChemComp.StdChemComp ['DNA',
'U']>
Reading: <open file '/Applications/ccpnmr/ccpnmr2.0/data/ccp/molecule/
ChemComp/DNA+U+msd_ccpnRef_2007-12-11-10-13-17_00008.xml', mode 'r' at
0x49c1920>
Last xml tag read: CHEM.ChemComp.chemAtomSets
Parser state was: handling version compatibility
Object stack was empty
Error during Exo link dereferencing. Object was:
<ccp.molecule.Molecule.MolResidue ['6mer', 6]>
values were: ['msd_ccpnRef_2007-12-11-10-13-16_00002']
tag name was: chemComp
Error loading file for: <ccp.molecule.Molecule.Molecule ['6mer']>
Reading: <open file '/Users/jec/CCPNMR2/SpPot1pN_Bound_DNA_assign/ccp/
molecule/Molecule/6mer
+SpPot1pN_Bound_DNA_assign_user_2008-09-05-17-51-31_00012.xml', mode
'r' at 0x49c1188>
Last xml tag read: _StorageUnit
Parser state was: postprocessing data
Object stack was empty
Error loading file for: <ccp.molecule.MolSystem.MolSystem ['MS1']>
Reading: <open file '/Users/jec/CCPNMR2/SpPot1pN_Bound_DNA_assign/ccp/
molecule/MolSystem/
MS1+SpPot1pN_Bound_DNA_assign_user_2008-09-05-17-51-31_00114.xml',
mode 'r' at 0x49c10f8>
Last xml tag read: _StorageUnit
Parser state was: checking validity
Object stack was empty
Error loading file for: <ccp.nmr.Nmr.NmrProject
['SpPot1pN_Bound_DNA_assign']>
Reading: <open file '/Users/jec/CCPNMR2/SpPot1pN_Bound_DNA_assign/ccp/
nmr/Nmr/SpPot1pN_Bound_DNA_assign
+SpPot1pN_Bound_DNA_assign_user_2008-09-05-17-51-31_00117.xml', mode
'r' at 0x3d0ed10>
Last xml tag read: NMR.AtomSet.atoms
Parser state was: reading
Current object was: <ccp.nmr.Nmr.AtomSet
['SpPot1pN_Bound_DNA_assign', 1]>
Any ideas? My guess is a botched conversion job.
Johnny
------------------------------------------------------------
Johnny Eugene Croy, Ph.D.
Research Associate
Wuttke Lab
University of Colorado, Boulder
Department of Chemistry and Biochemistry
UCB 215
Boulder, CO 80309-0215
Lab: (303) 492-2369
Mobile: (303) 304-6069
------------------------------------------------------------
