 |
 |
Thank you Fei for your input. Your response inspired me and I found the error I was making (a poorly truncated PDB file). However I have another question regarding BALBES for the brains out there. As I mentioned before, I have a two protein complex with a nice homology model for Protein 1 and the structure of Protein 2 is known (we're using only one domain of Protein 2 in our complex). Balbes finds a solution using the homology model of Protein 1 as an input (Rfree ~ .40) , but it stops there. I was under the impression that the program would then go ahead and try to fit Protein 2 using this newly found solution. It doesn't find a solution when using just the known structure of Protein 2 as a model. Is there a way to accomplish this? Sincerely, Jesse On Wed, Jan 28, 2009 at 1:25 PM, Dr. F Long <[log in to unmask]> wrote: > Dear Jesse, > > In both cases, there are some log files under, e,g. > Test/process_details/ > > If you can make tar.gz files on these log files and send them to us. > We can analyse what happened in your processes. > > Thanks, > > Fei > > Dr Fei Long > Structural Biology Laboratory > University of York > Heslington > York YO10 5YW UK > >