Pramod,
PyMOL is sensitive to residue numbering…
set retain_order
rebuild
may help.
Cheers,
P.S. The PyMOL mailing list can be found
at:
http://sourceforge.net/mail/?group_id=4546
From: CCP4 bulletin
board [mailto:[log in to unmask]] On
Behalf Of pramod madoori
Sent: Tuesday, November 04, 2008
5:03 AM
To: [log in to unmask]
Subject: [ccp4bb] pymol cartoon
problem
Dear All,
I have a simple but unresolved problem when representing one of my structure in
cartoon mode using Pymol. One of the bond between Trp and Gly in loop region is
represented well in coot as well as other molecular viewing softwares (Rasmol
and Molscript). When I tried to represent the same in pymol it shows a break at
the same position during cartoon representation and wire representation and not
when in lines representation. For your observation I am forwarding the images
of those regions from coot (with ED map) and pymol. Does any body had this
problem before and any solutions to circumvent this?
Thanking you
Pramod Kumar