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Hello, It looks like the compilation is working but when you are trying to run the program from the command line it is picking a v1 PYTHONPATH instead of the v2 one. Is there a bin/analysis? If so, does that mention 1.0 or 2.0 inside it? And if it mentions 2.0, what happens if you run it? Wayne On Mon, 18 Aug 2008, Jo Claridge wrote: > Hi, > > I am having trouble installing v2 of analysis, I get some odd compilation messages even > after copying the ccpnmr1.0 environment.txt and using that. > > below is a print out from the terminal window. > > ###################################################### > > Create environment file (y or n) (answer y unless you know otherwise)? n > cd memops/global; make > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math utility.c > gcc -c -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math python_util.c > python_util.c: In function ‘valid_py_object’: > python_util.c:54: warning: passing argument 1 of ‘equal_strings’ discards qualifiers from > pointer target type > python_util.c:54: warning: passing argument 2 of ‘equal_strings’ discards qualifiers from > pointer target type > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math hash_list.c > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math hash_table.c > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math mem_cache.c > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math mutex.c > gcc -c -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math py_mem_cache.c > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math block_file.c > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math int_array.c > gcc -c -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math py_block_file.c > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > BlockFile.so utility.o python_util.o hash_list.o hash_table.o mem_cache.o mutex.o > py_mem_cache.o block_file.o int_array.o py_block_file.o > gcc -c -DNEED_GLUT_INIT -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include - > I/sw/include -I/usr/X11R6/include -I/sw/include -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno- > common -ffast-math gl_handler.c > gcc -c -DUSE_GL_TRUE -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include - > I/sw/include -I/usr/X11R6/include -I/sw/include -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno- > common -ffast-math py_gl_handler.c > gcc -c -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include -I/sw/include -O3 - > DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math py_tk_util.c > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math w32func.c > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > GlHandler.so -L/usr/X11R6/lib -L/sw/lib -L/sw/lib -L/usr/X11R6/lib -L/sw/lib \ > utility.o python_util.o gl_handler.o py_gl_handler.o py_tk_util.o w32func.o - > lfreeglut -lGLU -lGL -ltk -ltcl -lX11 -lXext -lm > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > MemCache.so utility.o python_util.o hash_list.o hash_table.o mem_cache.o mutex.o > py_mem_cache.o > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math pdf_handler.c > gcc -c -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math py_pdf_handler.c > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > PdfHandler.so \ > utility.o python_util.o pdf_handler.o py_pdf_handler.o > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math ps_handler.c > gcc -c -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math py_ps_handler.c > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > PsHandler.so \ > utility.o python_util.o ps_handler.o py_ps_handler.o > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math fit.c > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math gamma.c > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math gauss_jordan.c > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math line_fit.c > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math nonlinear_model.c > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math random.c > gcc -c -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math py_fit.c > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > FitMethod.so fit.o gamma.o gauss_jordan.o line_fit.o nonlinear_model.o random.o utility.o > python_util.o py_fit.o > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math color.c > gcc -c -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include -I/sw/include -O3 - > DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math tk_handler.c > gcc -c -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include -I/sw/include -O3 - > DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math py_tk_handler.c > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > TkHandler.so -L/sw/lib -L/usr/X11R6/lib \ > utility.o python_util.o color.o tk_handler.o py_tk_handler.o py_tk_util.o > w32func.o -ltk -lX11 -lXext > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math store_file.c > gcc -c -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math py_store_file.c > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > StoreFile.so \ > utility.o python_util.o store_file.o py_store_file.o > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math store_handler.c > gcc -c -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math py_store_handler.c > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > StoreHandler.so \ > utility.o python_util.o store_handler.o py_store_handler.o > cd ccp/structure; make > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math atom.c > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math bond.c > gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC > -fno-common -ffast-math py_atom.c > cd ../../memops/global; make py_util_objects > make[2]: Nothing to be done for `py_util_objects'. > cd ../../memops/global; make color_objects > make[2]: Nothing to be done for `color_objects'. > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > StructAtom.so \ > atom.o bond.o py_atom.o ../../memops/global/python_util.o > ../../memops/global/utility.o ../../memops/global/color.o > gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC > -fno-common -ffast-math py_bond.c > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > StructBond.so \ > atom.o bond.o py_atom.o py_bond.o ../../memops/global/python_util.o > ../../memops/global/utility.o ../../memops/global/color.o > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math structure.c > gcc -c -I../../memops/global -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include - > I/sw/include -I/usr/X11R6/include -I/sw/include -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno- > common -ffast-math py_structure.c > cd ../../memops/global; make sorts_objects > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math sorts.c > cd ../../memops/global; make geometry_objects > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math geometry.c > cd ../../memops/global; make py_drawing_objects > gcc -c -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include -I/sw/include - > I/usr/X11R6/include -I/sw/include -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common - > ffast-math py_draw_handler.c > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > StructStructure.so -L/usr/X11R6/lib -L/sw/lib -L/sw/lib -L/usr/X11R6/lib -L/sw/lib \ > atom.o bond.o py_atom.o py_bond.o structure.o py_structure.o > ../../memops/global/python_util.o ../../memops/global/utility.o > ../../memops/global/color.o \ > ../../memops/global/sorts.o ../../memops/global/geometry.o > ../../memops/global/gl_handler.o ../../memops/global/pdf_handler.o > ../../memops/global/ps_handler.o ../../memops/global/store_handler.o > ../../memops/global/tk_handler.o ../../memops/global/w32func.o > ../../memops/global/py_draw_handler.o ../../memops/global/py_gl_handler.o > ../../memops/global/py_pdf_handler.o ../../memops/global/py_ps_handler.o > ../../memops/global/py_store_handler.o ../../memops/global/py_tk_handler.o > ../../memops/global/py_tk_util.o -lfreeglut -lGLU -lGL -ltk -ltcl -lX11 -lXext -lm > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math struct_util.c > gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC > -fno-common -ffast-math py_struct_util.c > cd ../../memops/global; make linalg_objects > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math eigenvalue.c > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math linalg.c > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > StructUtil.so \ > struct_util.o py_struct_util.o ../../memops/global/python_util.o > ../../memops/global/utility.o \ > ../../memops/global/geometry.o ../../memops/global/eigenvalue.o > ../../memops/global/linalg.o > cd ccpnmr/analysis; make > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math contour_data.c > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math contour_levels.c > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math contour_style.c > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math contour_file.c > gcc -c -I../../memops/global -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include - > I/sw/include -I/usr/X11R6/include -I/sw/include -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno- > common -ffast-math py_contour_levels.c > gcc -c -I../../memops/global -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include - > I/sw/include -I/usr/X11R6/include -I/sw/include -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno- > common -ffast-math py_contour_style.c > gcc -c -I../../memops/global -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include - > I/sw/include -I/usr/X11R6/include -I/sw/include -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno- > common -ffast-math py_contour_file.c > cd ../../memops/global; make py_block_file_objects > make[2]: Nothing to be done for `py_block_file_objects'. > cd ../../memops/global; make py_store_file_objects > make[2]: Nothing to be done for `py_store_file_objects'. > cd ../../memops/global; make contour_objects > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math contourer.c > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math list.c > cd ../../memops/global; make py_drawing_objects > make[2]: Nothing to be done for `py_drawing_objects'. > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > ContourFile.so -L/usr/X11R6/lib -L/sw/lib -L/sw/lib -L/usr/X11R6/lib -L/sw/lib \ > contour_data.o contour_levels.o contour_style.o contour_file.o > py_contour_levels.o py_contour_style.o py_contour_file.o > ../../memops/global/python_util.o ../../memops/global/utility.o > ../../memops/global/hash_list.o ../../memops/global/hash_table.o > ../../memops/global/mem_cache.o ../../memops/global/mutex.o > ../../memops/global/py_mem_cache.o ../../memops/global/block_file.o > ../../memops/global/int_array.o ../../memops/global/py_block_file.o \ > ../../memops/global/store_file.o ../../memops/global/py_store_file.o \ > ../../memops/global/contourer.o ../../memops/global/list.o > ../../memops/global/gl_handler.o ../../memops/global/pdf_handler.o > ../../memops/global/ps_handler.o ../../memops/global/store_handler.o > ../../memops/global/tk_handler.o ../../memops/global/w32func.o > ../../memops/global/py_draw_handler.o ../../memops/global/py_gl_handler.o > ../../memops/global/py_pdf_handler.o ../../memops/global/py_ps_handler.o > ../../memops/global/py_store_handler.o ../../memops/global/py_tk_handler.o > ../../memops/global/py_tk_util.o -lfreeglut -lGLU -lGL -ltk -ltcl -lX11 -lXext -lm > cd ../../memops/global; make py_mem_cache_objects > make[2]: Nothing to be done for `py_mem_cache_objects'. > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > ContourStyle.so \ > contour_style.o py_contour_style.o ../../memops/global/python_util.o > ../../memops/global/utility.o ../../memops/global/hash_list.o > ../../memops/global/hash_table.o ../../memops/global/mem_cache.o > ../../memops/global/mutex.o ../../memops/global/py_mem_cache.o > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > ContourLevels.so \ > contour_levels.o py_contour_levels.o ../../memops/global/python_util.o > ../../memops/global/utility.o ../../memops/global/hash_list.o > ../../memops/global/hash_table.o ../../memops/global/mem_cache.o > ../../memops/global/mutex.o ../../memops/global/py_mem_cache.o > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math method.c > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math peak.c > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math peak_list.c > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math symbol.c > gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC > -fno-common -ffast-math py_peak.c > gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC > -fno-common -ffast-math py_peak_list.c > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > PeakList.so \ > method.o peak.o peak_list.o symbol.o py_peak.o py_peak_list.o > ../../memops/global/python_util.o ../../memops/global/utility.o > ../../memops/global/hash_list.o ../../memops/global/hash_table.o > ../../memops/global/mem_cache.o ../../memops/global/mutex.o > ../../memops/global/py_mem_cache.o ../../memops/global/block_file.o > ../../memops/global/int_array.o ../../memops/global/py_block_file.o -lm > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math slice_file.c > gcc -c -I../../memops/global -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include - > I/sw/include -I/usr/X11R6/include -I/sw/include -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno- > common -ffast-math py_slice_file.c > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > SliceFile.so -L/usr/X11R6/lib -L/sw/lib -L/sw/lib -L/usr/X11R6/lib -L/sw/lib \ > slice_file.o py_slice_file.o ../../memops/global/python_util.o > ../../memops/global/utility.o ../../memops/global/hash_list.o > ../../memops/global/hash_table.o ../../memops/global/mem_cache.o > ../../memops/global/mutex.o ../../memops/global/py_mem_cache.o > ../../memops/global/block_file.o ../../memops/global/int_array.o > ../../memops/global/py_block_file.o \ > ../../memops/global/gl_handler.o ../../memops/global/pdf_handler.o > ../../memops/global/ps_handler.o ../../memops/global/store_handler.o > ../../memops/global/tk_handler.o ../../memops/global/w32func.o > ../../memops/global/py_draw_handler.o ../../memops/global/py_gl_handler.o > ../../memops/global/py_pdf_handler.o ../../memops/global/py_ps_handler.o > ../../memops/global/py_store_handler.o ../../memops/global/py_tk_handler.o > ../../memops/global/py_tk_util.o -lfreeglut -lGLU -lGL -ltk -ltcl -lX11 -lXext -lm > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math win_peak_list.c > gcc -c -I../../memops/global -I/sw/include/python2.5 -I/usr/X11R6/include -I/sw/include - > I/sw/include -I/usr/X11R6/include -I/sw/include -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno- > common -ffast-math py_win_peak_list.c > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > WinPeakList.so -L/usr/X11R6/lib -L/sw/lib -L/sw/lib -L/usr/X11R6/lib -L/sw/lib \ > method.o peak.o peak_list.o symbol.o win_peak_list.o py_peak.o > py_peak_list.o py_win_peak_list.o ../../memops/global/python_util.o > ../../memops/global/utility.o ../../memops/global/hash_list.o > ../../memops/global/hash_table.o ../../memops/global/mem_cache.o > ../../memops/global/mutex.o ../../memops/global/py_mem_cache.o > ../../memops/global/block_file.o ../../memops/global/int_array.o > ../../memops/global/py_block_file.o \ > ../../memops/global/gl_handler.o ../../memops/global/pdf_handler.o > ../../memops/global/ps_handler.o ../../memops/global/store_handler.o > ../../memops/global/tk_handler.o ../../memops/global/w32func.o > ../../memops/global/py_draw_handler.o ../../memops/global/py_gl_handler.o > ../../memops/global/py_pdf_handler.o ../../memops/global/py_ps_handler.o > ../../memops/global/py_store_handler.o ../../memops/global/py_tk_handler.o > ../../memops/global/py_tk_util.o -lfreeglut -lGLU -lGL -ltk -ltcl -lX11 -lXext -lm > cd ccpnmr/clouds; make > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math atom_coord.c > gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC > -fno-common -ffast-math py_atom_coord.c > cd ../../memops/global; make py_util_objects > make[2]: Nothing to be done for `py_util_objects'. > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > AtomCoord.so atom_coord.o py_atom_coord.o ../../memops/global/python_util.o > ../../memops/global/utility.o > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math atom_coord_list.c > gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC > -fno-common -ffast-math py_atom_coord_list.c > py_atom_coord_list.c:316: warning: initialization from incompatible pointer type > py_atom_coord_list.c:319: warning: initialization from incompatible pointer type > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > AtomCoordList.so atom_coord.o py_atom_coord.o atom_coord_list.o > py_atom_coord_list.o ../../memops/global/python_util.o ../../memops/global/utility.o > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math dist_force.c > gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC > -fno-common -ffast-math py_dist_force.c > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > DistForce.so dist_force.o py_dist_force.o ../../memops/global/python_util.o > ../../memops/global/utility.o > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math dist_constraint.c > gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC > -fno-common -ffast-math py_dist_constraint.c > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > DistConstraint.so dist_constraint.o py_dist_constraint.o ../../memops/global/python_util.o > ../../memops/global/utility.o > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math dist_constraint_list.c > gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC > -fno-common -ffast-math py_dist_constraint_list.c > py_dist_constraint_list.c:321: warning: initialization from incompatible pointer type > py_dist_constraint_list.c:324: warning: initialization from incompatible pointer type > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > DistConstraintList.so dist_constraint.o py_dist_constraint.o dist_constraint_list.o > py_dist_constraint_list.o ../../memops/global/python_util.o ../../memops/global/utility.o > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math dynamics.c > gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC > -fno-common -ffast-math py_dynamics.c > cd ../../memops/global; make random_objects > make[2]: Nothing to be done for `random_objects'. > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > Dynamics.so atom_coord.o atom_coord_list.o dist_constraint.o dist_constraint_list.o > dist_force.o dynamics.o py_atom_coord.o py_atom_coord_list.o py_dist_constraint.o > py_dist_constraint_list.o py_dist_force.o py_dynamics.o \ > ../../memops/global/python_util.o ../../memops/global/utility.o > ../../memops/global/random.o -lm > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math midge.c > gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC > -fno-common -ffast-math py_midge.c > cd ../../memops/global; make diag_objects > gcc -c -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast-math diag_dbl.c > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > Midge.so midge.o py_midge.o \ > ../../memops/global/python_util.o ../../memops/global/utility.o > ../../memops/global/diag_dbl.o -lm > gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC > -fno-common -ffast-math py_cloud_util.c > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > CloudUtil.so py_cloud_util.o -lm > gcc -c -I../../memops/global -O3 -DDO_NOT_HAVE_MALLOC -fPIC -fno-common -ffast- > math bacus.c > gcc -c -I../../memops/global -I/sw/include/python2.5 -O3 -DDO_NOT_HAVE_MALLOC -fPIC > -fno-common -ffast-math py_bacus.c > gcc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.5 "-Wl,- > dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dyli > b:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib" -o > Bacus.so bacus.o py_bacus.o \ > ../../memops/global/python_util.o ../../memops/global/utility.o -lm > rm: *.so: No such file or directory > rm: *.so: No such file or directory > rm: *.so: No such file or directory > > ####################################################### > > the program does not start so I tried running AnalysisGui.py from the command line and > got this: > > Traceback (most recent call last): > File "AnalysisGui.py", line 70, in <module> > from memops.general.Io import loadProject > ImportError: cannot import name loadProject > > I notice there are some memops related problems in the compilation process... > This happens on both my OS X box and a Linux box. > > cheers, > Jo Claridge >