Hi,

How did you run first, via the "run_first" or the "run_first_all"
script? If it was run_first, did you use the model with that use the
thalamus intensities as reference?

Cheers,

Brian

On 7 Jul 2008, at 14:10, Jay Ives wrote:

> Hi Brian,
>
> Thanks for your interest. The files are ROA.hdr and ROA.img. The
> upload session reference number is 994681.
> I converted the DICOM image set to ANALYZE format with MRIConvert
> so as to use MRIcro to clip and convert to axial format to use in
> FIRST.
> I find the lateral aspect of the left hippocampus body is not
> completely within the model. I don't think there is anything else
> there such as choroid plexus.
> I look forward to your comments.
>
> Cheers................J
>
> ----- Original Message ----- From: "Brian Patenaude"
> <[log in to unmask],'','','')">[log in to unmask]>
> To: <[log in to unmask],'','','')">[log in to unmask]>
> Sent: Monday, July 07, 2008 5:59 PM
> Subject: Re: [FSL] FIRST Hippocampus Segmentation
>
>
>> Hi,
>>
>> Could you upload an example image at http://www.fmrib.ox.ac.uk/
>> cgi- bin/upload.cgi ?
>>
>> Cheers,
>>
>> Brian
>>
>>
>>
>>
>> On 6 Jul 2008, at 13:59, Jay Ives wrote:
>>
>>> The lateral aspect of the hippocampus body is occasionally not
>>> included
>>> within the surface. I've tried 30 and 40 modes and different p
>>> values in
>>> these cases, but without effect. Is there anything else that can
>>> be tried?
>>> Thx....J
>>>
>