On Thu, Jul 31, 2008 at 6:45 PM, Paul Robinson
<[log in to unmask]> wrote:
Dear Randomise Experts,
I'm trying to run Randomise on four groups, but am having little luck. I was wondering if someone wouldn't mind just looking over my .mat and .con files to see if I've missed something. Thanks!
more glm_setup.mat
/NumWaves 4
/NumPoints 62
/PPheights 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
/Matrix
1.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
1.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
1.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
1.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
1.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
1.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
1.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
1.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
1.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
1.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
1.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 1.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 1.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 1.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 1.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 1.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 1.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 1.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 1.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 1.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 1.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 1.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 1.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 1.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 1.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 1.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 1.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 1.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 0.000000e+00 1.000000e+00 0.000000e+00
0.000000e+00 0.000000e+00 1.000000e+00 0.000000e+00
0.000000e+00 0.000000e+00 1.000000e+00 0.000000e+00
0.000000e+00 0.000000e+00 1.000000e+00 0.000000e+00
0.000000e+00 0.000000e+00 1.000000e+00 0.000000e+00
0.000000e+00 0.000000e+00 1.000000e+00 0.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
more glm_setup.con
/ContrastName1 Control>Scz
/ContrastName2 Control>THC
/ContrastName3 Control>Scz+THC
/ContrastName4 Scz>THC
/ContrastName5 Scz>Scz+THC
/ContrastName6 Scz>Control
/ContrastName7 THC>Scz
/ContrastName8 THC>Scz+THC
/ContrastName9 THC>Control
/ContrastName10 Scz+THC>Scz
/ContrastName11 Scz+THC>THC
/ContrastName12 Scz+THC>Control
/ContrastName13 Control_mean
/ContrastName14 Scz_mean
/ContrastName15 THC_mean
/ContrastName16 Scz+THC_mean
/NumWaves 4
/NumContrasts 16
/PPheights 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e
+00 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e
+00 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00 1.000000e+00
/RequiredEffect 1.419 1.226 1.794 1.543 2.024 1.419 1.543 1.894 1.226 2
.024 1.894 1.794 0.754 1.203 0.967 1.628
/Matrix
-1.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 -1.000000e+00 0.000000e+00 1.000000e+00
0.000000e+00 0.000000e+00 -1.000000e+00 1.000000e+00
1.000000e+00 -1.000000e+00 0.000000e+00 0.000000e+00
1.000000e+00 0.000000e+00 -1.000000e+00 0.000000e+00
1.000000e+00 0.000000e+00 0.000000e+00 -1.000000e+00
-1.000000e+00 1.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 1.000000e+00 -1.000000e+00 0.000000e+00
0.000000e+00 1.000000e+00 0.000000e+00 -1.000000e+00
-1.000000e+00 0.000000e+00 1.000000e+00 0.000000e+00
0.000000e+00 -1.000000e+00 1.000000e+00 0.000000e+00
0.000000e+00 0.000000e+00 1.000000e+00 -1.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 1.000000e+00
1.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 1.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 0.000000e+00 1.000000e+00 0.000000e+00
And here's the command I run, as well as it's error:
randomise -i all_FA_skeletonised.nii.gz -o all_groups.nii.gz -d glm_setup.mat -t glm_setup.con -f glm_setup.fts -g glm_setup.grp -n 5000 -c 3
terminate called after throwing an instance of 'NEWMAT::ProgramException'
Abort
I'm just not sure where I'm going wrong here. Any advice would be greatly appreciated.
Thanks!
Cheers,
Paul