Hi,
If all you want is just to read and save images then the FSL matlab
scripts
should work too.
You will need to do:
addpath('/usr/local/fsl/etc/matlab');
in matlab (substitute /usr/local/fsl with wherever you've installed it
locally)
in order to tell matlab where all the relevant files are.
If you still have any problems, please let us know.
All the best,
Mark
On 23 Jul 2008, at 08:20, Assaf Razon wrote:
> There's also the very useful Tools for NIfTI (ANALYZE) MR image in
> MATLAB
>
> http://www.rotman-baycrest.on.ca/~jimmy/NIFTI/
>
>
> It has procedures to read, write, and view NIFTI files, including
> callback "hooks" to further extend it.
>
>
>
>
> On Tue, Jul 22, 2008 at 9:21 PM, Steve Smith <[log in to unmask]>
> wrote:
> Hi - you can find the read_avw and save_avw matlab scripts in
> $FSLDIR/etc/matlab
> Cheers.
>
>
>
> On 22 Jul 2008, at 09:09, tingying wrote:
>
> Dear All,
>
> How can I load FSL nii.gz image to matlab. Though I was told to use
> read_avw, I don't know how to make FSL talk to matlab (though I
> download the m-file for read_avw, it still lack some other files).
> My system is linux, so perhaps it is not too hard to make them talk
> to each other. I would be grateful for your advices.
>
> Regards
> Tinying
>
> --
> Tingying Peng
> PhD student in Biomedical Engineering
> University of Oxford
> Old Road Campus Research Building (off Roosevelt Drive)
> Headington, Oxford OX3 7DQ, UK
> Tel: +44-(0)1865-617660
> Email: [log in to unmask]
>
>
>
> ---------------------------------------------------------------------------
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> ---------------------------------------------------------------------------
>
