Hi Wen Wei,
Maybe this is not a perfect
solution for your question, I guess you can do like
this :
1. get a jobfile just select one subject as the
source image through spm's GUI, named "tempjob.mat";
2. write a matlab script to modify the
jobfile
cd
/xxx/data % specify your source image's directory
and read their names
subjects =
struct2cell(dir);
[m.n] = size
(subjects);
load tempjob.mat %load the jobfile and
add in the all source images
for i =
3:n
subjects_name = subject{1,i};
jobs{1,1}.spatial{1,1}.normalise{1,1}.estwrite.subj(1,i+1).source = subjects_name;
jobs{1,1}.spatial{1,1}.normalise{1,1}.estwrite.subj(1,i+1).resample =
jobs{1,1}.spatial{1,1}.normalise{1,1}.estwrite.subj(1,1).resample ;
jobs{1,1}.spatial{1,1}.normalise{1,1}.estwrite.subj(1,i+1).wtsrc = subjects_name;
end
save alljob.mat
jobs
%save the modified jobfile
3. load the modified jobfile in spm's GUI and run
it.
help this can help you!
bin lv
2008-06-05
The Key Lab of Complex Systems and
Intelligence Science,
Institute of Automation,
Chinese Academy of
Sciences.
发件人： Wen, Wei
发送时间： 2008-06-04 16:30:28
抄送：
主题： Re: [SPM] SPM5: multiple
file selection for "normalization"?
-
Hi Karsten,
If there are n subjects then you need to "define" all these n subjects
and then run it. I was thinking of putting all the source images under
one directory and select them all and then run the who process in one
go. Otherwise, if this n=500, then you need to do this 500 times which
would be very tedious. Do I miss some tricks here?
Many thanks,
Wei Wen
Karsten Specht wrote:
> Dear Wei Wen,
>
>
>> Is there a way of selecting multiple files (as source) in normalization
>> process (using the same template target) ? Smoothing etc can be done in
>> that fashion but not normalization it seems.
>>
>
> you should select only one source per subject, but in SPM2 as well as SPM5, you have the possibility to define a set of subjects, which should be normalized to the same template.
>
> Karsten
>
> --
> -------------------------------------------------------------
> Karsten Specht, PhD
>
> Department of Biological and Medical Psychology
> & National Competence Centre for functional MRI
> University of Bergen
> Jonas Lies vei 91
> 5009 Bergen
> Norway
> Tel.: +47-555-86279
> Fax: +47-555-89872
> http://fmri.uib.no/
>
>
