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Rasmus, Robert already sent it to me so I've now forwarded it to you. Wayne On Wed, 18 Jun 2008, Rasmus Fogh wrote: > Dear Robert, > > Could you send me the PDB file, as well as the sequence (one- or > three-letter codes)? Then I could try out a few things. > > Also, what happens exactly when 'the gaps in the pdb file creates > mismatches in the target chain'? > > Yours, > > Rasmus > > > > --------------------------------------------------------------------------- > Dr. Rasmus H. Fogh Email: [log in to unmask] > Dept. of Biochemistry, University of Cambridge, > 80 Tennis Court Road, Cambridge CB2 1GA, UK. FAX (01223)766002 > > On Wed, 18 Jun 2008, Robert Dagil wrote: > > > Hello CCPN-crew and others > > > > I'm very interested in importing a pdb-file through analysis, so that I can > > use these distances for noe assignment. The only problem is, that the > > pdb-file containing a crystal structure has segments missing. The start-end > > numbering mathces my sequence, but two regions in the middle are not > > present. When importing the pdb-file the gaps in the pdb file creates miss > > matches in the target chain. Any idea how to tweak the file so that analysis > > skips the missing regions? > > > > Kind regards > > > > Robert Dagil > > University of Copenhagen > > >