Hi Neeraj,<br><br>CCP4 has a program which allows one to draw topology diagram manually...it&#39;s easy to learn and use.<br><a href="http://stein.bioch.dundee.ac.uk/~charlie/software/topdraw/">http://stein.bioch.dundee.ac.uk/~charlie/software/topdraw/</a><br>
<br>There is another program called &quot;TOPS&quot; (website is currently under maintenance) which generates topology diagram according to your pdb file.<br>&nbsp;<a href="http://www.tops.leeds.ac.uk/">http://www.tops.leeds.ac.uk/</a><br>
<br>Hope it helps!<br>Simanshu<br><br><div class="gmail_quote">On Wed, Jun 11, 2008 at 11:07 AM, Neeraj &lt;<a href="mailto:[log in to unmask]"><a href="/cgi-bin/wa-jisc.exe?LOGON=A3%3Dind0806%26L%3DCCP4BB%26E%3D7bit%26P%3D1400355%26B%3D------%253D_Part_22570_2552361.1213216994636%26T%3Dtext%252Fhtml%3B%2520charset%3DISO-8859-1%26pending%3D" target="_parent" >[log in to unmask]</a></a>&gt; wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi all,<br>
 &nbsp; &nbsp; wondering if anyone knows of a user friendly and esy to use program for generating topology diagrams for proteins. Any help would be very useful to me.<br>
<br>
thanks,<br>
Neeraj<br>
<br>
-- <br>
Neeraj Kapoor<br>
TPCB Graduate Fellow<br>
Sakmar Lab/ Molecular Biology &amp; Biochemistry<br>
The Rockefeller University<br>
1230 York Avenue, RRB 510<br>
New York, NY 10021<br>
lab.1.212.327.8284:fax.7904<br>
mobile: 917.535.2030<br>
<a href="http://www.rockefeller.edu/labheads/sakmar/sakmar-lab.html" target="_blank">http://www.rockefeller.edu/labheads/sakmar/sakmar-lab.html</a> <br>
</blockquote></div><br><br clear="all"><br>-- <br>Dhirendra K Simanshu<br>Research Fellow <br>Memorial Sloan-Kettering Cancer Center<br>New York, NY, USA