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Hi Neeraj, CCP4 has a program which allows one to draw topology diagram manually...it's easy to learn and use. http://stein.bioch.dundee.ac.uk/~charlie/software/topdraw/ There is another program called "TOPS" (website is currently under maintenance) which generates topology diagram according to your pdb file. http://www.tops.leeds.ac.uk/ Hope it helps! Simanshu On Wed, Jun 11, 2008 at 11:07 AM, Neeraj <[log in to unmask]> wrote: > Hi all, > wondering if anyone knows of a user friendly and esy to use program for > generating topology diagrams for proteins. Any help would be very useful to > me. > > thanks, > Neeraj > > -- > Neeraj Kapoor > TPCB Graduate Fellow > Sakmar Lab/ Molecular Biology & Biochemistry > The Rockefeller University > 1230 York Avenue, RRB 510 > New York, NY 10021 > lab.1.212.327.8284:fax.7904 > mobile: 917.535.2030 > http://www.rockefeller.edu/labheads/sakmar/sakmar-lab.html > -- Dhirendra K Simanshu Research Fellow Memorial Sloan-Kettering Cancer Center New York, NY, USA