Hi, The registrations have not completed - there may be some useful information in the tbss_2_reg.e* files. If this doesn't help you to resolve what's happening, please upload the whole directory for us to look at. Please upload the files in a single compressed tarfile to http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi And then email me the upload ID. Cheers. On 3 May 2008, at 05:53, [log in to unmask] wrote: > Dear Prof. Smith > just few minutes later the execution of the command > “tbss_2_reg -T” appears the number 13287 > and in the dir FAi are generated, as you can see > from below, the files (attached with the e-mail) > tbss_2_reg.e13287.1 > tbss_2_reg.e13287.2 > > In the slicesdir are images of good quality > Thanks for your attention > > Donatella Giuliani > > [giuliani@localhost TBSS_NEW]$ tbss_2_reg -T > C117_GB_dti_FA_FAi_to_target > C119_PL_dti_FA_FAi_to_target > 13287 > > [giuliani@localhost TBSS_NEW]$ ls > FAi origdata > > [giuliani@localhost TBSS_NEW]$ cd FAi > [giuliani@localhost FAi]$ ls lart > total 15472 > rwrwr1 > giuliani giuliani 666792 May 2 09:54 C117_GB_dti_FA_FAi.img > rwrwr1 > giuliani giuliani 348 May 2 09:54 C117_GB_dti_FA_FAi.hdr > rwrwr1 > giuliani giuliani 666792 May 2 09:54 C119_PL_dti_FA_FAi.img > rwrwr1 > giuliani giuliani 348 May 2 09:54 C119_PL_dti_FA_FAi.hdr > drwxrwxrx > 4 giuliani giuliani 4096 May 2 09:54 .. > drwxrwxrx > 2 giuliani giuliani 4096 May 2 09:54 slicesdir > rwrwr1 > giuliani giuliani 0 May 2 09:56 tbss_2_reg.o13287.2 > rwrwr1 > giuliani giuliani 0 May 2 09:56 tbss_2_reg.o13287.1 > rwrwr1 > giuliani giuliani 3389 May 2 09:56 tbss_2_reg.e13287.2 > rwrwr1 > giuliani giuliani 3389 May 2 09:56 tbss_2_reg.e13287.1 > rwrwr1 > giuliani giuliani 14442064 May 2 09:56 target.img > rwrwr1 > giuliani giuliani 348 May 2 09:56 target.hdr > rwrwr1 > giuliani giuliani 108 May 2 09:56 .commands > rwrwr1 > giuliani giuliani 0 May 2 09:56 > C119_PL_dti_FA_FAi_to_target_nonlinear.msf > rwrwr1 > giuliani giuliani 0 May 2 09:56 > C117_GB_dti_FA_FAi_to_target_nonlinear.msf > drwxrwxrx > 3 giuliani giuliani 4096 May 2 09:56 . > [giuliani@localhost FAi]$ > > > > > > > <tbss_2_reg.e13287.1><tbss_2_reg.e13287.2> --------------------------------------------------------------------------- Stephen M. Smith, Professor of Biomedical Engineering Associate Director, Oxford University FMRIB Centre FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK +44 (0) 1865 222726 (fax 222717) [log in to unmask] http://www.fmrib.ox.ac.uk/~steve ---------------------------------------------------------------------------