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Hello.

I am trying to refine a structure that has 2 ligand conformations as seen in the electron density. I tried to put both conformations in Coot and format the PDB similar to a residue alternate conformation and changing the occupancies to 0.50 for each conformation. This formatting did not work when I ran Refmac5 for the Refinement. Has anyone had this issue before? And can anyone suggest a PDB format that will work in Refmac5?

Thanks,
Kathleen