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Hi, 

I have a question referring to the Eddy Current Correction procedure in the
FDT module:

Since the procedure corrects for simple head motion, using affine
registration to a reference volume, shouldn't the diffusion gradients also
be rotated together with the respective slices? (as suggested by Landman,
Farrell, Patel, Mori & Prince in DTI Fiber Tracking: The Importance of
Adjusting DTI Gradient Tables for Motion Correction (HBM2007)
http://www.iacl.ece.jhu.edu/~bennett/pubs/Landman-07-HBM-CATNAP.pdf)

If the gradients should be rotated, then what is the procedure?

Thanks, 

Alina